Release notes for DIPY version 0.7ΒΆ

GitHub stats for 2013/03/29 - 2013/12/23 (tag: 0.6.0)

The following 16 authors contributed 814 commits.

  • Ariel Rokem
  • Bago Amirbekian
  • Eleftherios Garyfallidis
  • Emmanuel Caruyer
  • Erik Ziegler
  • Gabriel Girard
  • Jean-Christophe Houde
  • Kimberly Chan
  • Matthew Brett
  • Matthias Ekman
  • Matthieu Dumont
  • Mauro Zucchelli
  • Maxime Descoteaux
  • Samuel St-Jean
  • Stefan van der Walt
  • Sylvain Merlet

We closed a total of 84 pull requests; this is the full list (generated with the script tools/github_stats.py):

Pull Requests (84):

  • PR #292: Streamline tools
  • PR #289: Examples checked for peaks_from_model
  • PR #288: Link shore examples
  • PR #279: Update release 0.7 examples’ system
  • PR #257: Continuous modelling: SHORE
  • PR #285: Bad seeds cause segfault in EuDX
  • PR #274: Peak directions update
  • PR #275: Restore example
  • PR #261: R2 term response function for Sharpening Deconvolution Transform (SDT)
  • PR #273: Fixed typos + autopep8
  • PR #268: Add gfa shmfit
  • PR #260: NF: Command line interface to QuickBundles.
  • PR #270: Removed minmax_normalize from dipy.reconst.peaks
  • PR #247: Model base
  • PR #267: Refactoring peaks_from_model_parallel
  • PR #219: Update forward sdeconv mat
  • PR #266: BF - join pool before trying to delete temp directory
  • PR #265: Peak from model issue #253
  • PR #264: peak_from_model tmp files
  • PR #263: Refactoring peaks calculations to be out of odf.py
  • PR #262: Handle cpu count exception
  • PR #255: Fix peaks_from_model_parallel
  • PR #259: Release 0.7 a few cleanups
  • PR #252: Clean cc
  • PR #243: NF Added norm input to interp_rbf and angle as an alternative norm.
  • PR #251: Another cleanup for fvtk. This time the slicer function was simplified
  • PR #249: Dsi metrics 2
  • PR #239: Segmentation based on rgb threshold + examples
  • PR #240: Dsi metrics
  • PR #245: Fix some rewording
  • PR #242: A new streamtube visualization method and different fixes and cleanups for the fvtk module
  • PR #237: WIP: cleanup docs / small refactor for median otsu
  • PR #221: peaks_from_model now return peaks directions
  • PR #234: BF: predict for cases when the ADC is multi-D and S0 is provided as a volume
  • PR #232: Fix peak extraction default value of relative_peak_threshold
  • PR #227: Fix closing upon download completion in fetcher
  • PR #230: Tensor predict
  • PR #229: BF: input.dtype is used per default
  • PR #210: Brainextraction
  • PR #226: SetInput in vtk5 is now SetInputData in vtk6
  • PR #225: fixed typo
  • PR #212: Tensor visualization
  • PR #223: Fix make examples for windows.
  • PR #222: Fix restore bug
  • PR #217: RF - update csdeconv to use SphHarmFit class to reduce code duplication.
  • PR #208: Shm coefficients in peaks_from_model
  • PR #216: BF - fixed mask_voxel_size bug and added test. Replaced promote_dtype wi...
  • PR #211: Added a md5 check to each dataset.
  • PR #54: Restore
  • PR #213: Update to a more recent version of six.py.
  • PR #204: Maxime’s [Gallery] Reconst DTI example revisited
  • PR #207: Added two new datasets online and updated fetcher.py.
  • PR #209: Fixed typos in reconst/dti.py
  • PR #206: DOC: update the docs to say that we support python 3
  • PR #205: RF: Minor corrections in index.rst and CSD example
  • PR #173: Constrained Spherical Deconvolution and the Spherical Deconvolution Transform
  • PR #203: RF: Rename tensor statistics to remove “tensor_” from them.
  • PR #202: Typos
  • PR #201: Bago’s Rename sph basis functions corrected after rebasing and other minor lateral fixes
  • PR #191: DOC - clarify docs for SphHarmModel
  • PR #199: FIX: testfail due to Non-ASCII character xe2 in markov.py
  • PR #189: Shm small fixes
  • PR #196: DOC: add reference section to ProbabilisticOdfWeightedTracker
  • PR #190: BF - fix fit-tensor handling of file extensions and mask=none
  • PR #182: RF - fix disperse_charges so that a large constant does not cause the po...
  • PR #183: OPT: Modified dipy.core.sphere_stats.random_uniform_on_sphere, cf issue #181
  • PR #185: DOC: replace soureforge.net links with nipy.org
  • PR #180: BF: fix Cython TypeError from negative indices to tuples
  • PR #179: BF: doctest output difference workarounds
  • PR #176: MRG: Py3 compat
  • PR #178: RF: This function is superseded by read_bvals_bvecs.
  • PR #170: Westin stats
  • PR #174: RF: use $PYTHON variable for python invocation
  • PR #172: DOC: Updated index.rst and refactored example segment_quickbundles.py
  • PR #169: RF: refactor pyx / c file stamping for packaging
  • PR #168: DOC: more updates to release notes
  • PR #167: Merge maint
  • PR #166: BF: pyc and created trk files were in eg archive
  • PR #160: NF: add script to build dmgs from buildbot mpkgs
  • PR #164: Calculation for mode of a tensor
  • PR #163: Remove dti tensor
  • PR #161: DOC: typo in the probabilistic tracking example.
  • PR #162: DOC: update release notes
  • PR #159: Rename install test scripts