Release notes for Dipy version 0.9

GitHub stats for 2015/01/06 - 2015/03/18 (tag: 0.8.0)

The following 12 authors contributed 235 commits.

  • Ariel Rokem
  • Bago Amirbekian
  • Chantal Tax
  • Eleftherios Garyfallidis
  • Gabriel Girard
  • Marc-Alexandre Côté
  • Matthew Brett
  • Maxime Descoteaux
  • Omar Ocegueda
  • Qiyuan Tian
  • Samuel St-Jean
  • Stefan van der Walt

We closed a total of 80 issues, 35 pull requests and 45 regular issues; this is the full list (generated with the script tools/github_stats.py):

Pull Requests (35):

  • PR #594: DOC + PEP8: Mostly just line-wrapping.
  • PR #575: Speeding up LiFE
  • PR #595: BF: csd predict multi
  • PR #599: BF: use dpy_rint instead of round for Windows
  • PR #603: Fix precision error in test_center_of_mass
  • PR #601: BF: Some versions (<0.18) of numpy don’t have nanmean.
  • PR #598: Fixed undetected compilation errors prior to Cython 0.22
  • PR #596: DOC + PEP8: Clean up a few typos, PEP8 things, etc.
  • PR #593: DOC: fixed some typos and added a notes section to make the document mor...
  • PR #588: Nf csd calibration
  • PR #565: Adding New Tissue Classifiers
  • PR #589: DOC: minor typographic corrections
  • PR #584: DOC: explain the changes made to the integration lenght in GQI2.
  • PR #568: Quickbundles2
  • PR #559: SFM for multi b-value data
  • PR #586: BF: all_tensor_evecs should rotate from eye(3) to e0.
  • PR #574: Affine registration PR1: Transforms.
  • PR #581: BF: Normalization of GQI2 gqi_vector.
  • PR #580: docstring for tensor fit was wrong
  • PR #579: RF: Compatibility with scipy 0.11
  • PR #577: BF: update cython signatures with except values
  • PR #553: RF: use cholesky to solve csd
  • PR #552: Small refactor of viz.regtools
  • PR #569: DOC: How to install vtk using conda.
  • PR #571: Bf cart2sphere
  • PR #557: NF: geodesic anisotropy
  • PR #566: DOC: Some small fixes to the documentation of SFM.
  • PR #563: RF: Cleanup functions that refer to some data that no longer exists here...
  • PR #564: fixed typo
  • PR #561: Added option to return the number of voxels fitting the fa threshold
  • PR #554: DOC: Link to @francopestilli’s matlab implementation of LiFE.
  • PR #556: RF: change config variable to C define
  • PR #550: Added non-local means in Changelog
  • PR #551: Website update
  • PR #549: DOC: Update download link.

Issues (45):

  • #594: DOC + PEP8: Mostly just line-wrapping.
  • #575: Speeding up LiFE
  • #595: BF: csd predict multi
  • #599: BF: use dpy_rint instead of round for Windows
  • #603: Fix precision error in test_center_of_mass
  • #602: Precision error in test_feature_center_of_mass on 32-bit Linux
  • #601: BF: Some versions (<0.18) of numpy don’t have nanmean.
  • #598: Fixed undetected compilation errors prior to Cython 0.22
  • #597: tracking module not building on cython 0.22
  • #596: DOC + PEP8: Clean up a few typos, PEP8 things, etc.
  • #404: A better way to create a response function for CSD
  • #593: DOC: fixed some typos and added a notes section to make the document mor...
  • #588: Nf csd calibration
  • #565: Adding New Tissue Classifiers
  • #589: DOC: minor typographic corrections
  • #584: DOC: explain the changes made to the integration lenght in GQI2.
  • #568: Quickbundles2
  • #559: SFM for multi b-value data
  • #586: BF: all_tensor_evecs should rotate from eye(3) to e0.
  • #585: NF: Initial file strcuture skeleton for amico implementation
  • #574: Affine registration PR1: Transforms.
  • #581: BF: Normalization of GQI2 gqi_vector.
  • #580: docstring for tensor fit was wrong
  • #579: RF: Compatibility with scipy 0.11
  • #577: BF: update cython signatures with except values
  • #553: RF: use cholesky to solve csd
  • #552: Small refactor of viz.regtools
  • #569: DOC: How to install vtk using conda.
  • #571: Bf cart2sphere
  • #557: NF: geodesic anisotropy
  • #567: NF - added function to fetch/read stanford pve maps
  • #566: DOC: Some small fixes to the documentation of SFM.
  • #414: NF - added anatomically-constrained tractography (ACT) tissue classifier
  • #560: dipy.data: three_shells_voxels is not there
  • #563: RF: Cleanup functions that refer to some data that no longer exists here...
  • #564: fixed typo
  • #561: Added option to return the number of voxels fitting the fa threshold
  • #554: DOC: Link to @francopestilli’s matlab implementation of LiFE.
  • #556: RF: change config variable to C define
  • #555: Use chatroom for dev communications
  • #354: Test failures of 0.7.1 on wheezy and squeeze 32bit
  • #532: SPARC buildbot fail in multiprocessing test
  • #550: Added non-local means in Changelog
  • #551: Website update
  • #549: DOC: Update download link.