Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X

_

__init__() (nibabel.affines.AffineError method)
(nibabel.analyze.AnalyzeHeader method)
(nibabel.analyze.AnalyzeImage method)
(nibabel.arrayproxy.ArrayProxy method)
(nibabel.arraywriters.ArrayWriter method)
(nibabel.arraywriters.ScalingError method)
(nibabel.arraywriters.SlopeArrayWriter method)
(nibabel.arraywriters.SlopeInterArrayWriter method)
(nibabel.arraywriters.WriterError method)
(nibabel.batteryrunners.BatteryRunner method)
(nibabel.batteryrunners.Report method)
(nibabel.casting.CastingError method)
(nibabel.casting.FloatingError method)
(nibabel.checkwarns.ErrorWarnings method)
(nibabel.checkwarns.IgnoreWarnings method)
(nibabel.data.Bomber method)
(nibabel.data.BomberError method)
(nibabel.data.DataError method)
(nibabel.data.Datasource method)
(nibabel.data.VersionedDatasource method)
(nibabel.deprecated.FutureWarningMixin method)
(nibabel.deprecated.ModuleProxy method)
(nibabel.deprecated.VisibleDeprecationWarning method)
(nibabel.deprecator.Deprecator method)
(nibabel.deprecator.ExpiredDeprecationError method)
(nibabel.dft.CachingError method)
(nibabel.dft.DFTError method)
(nibabel.dft.InstanceStackError method)
(nibabel.dft.VolumeError method)
(nibabel.ecat.EcatHeader method)
(nibabel.ecat.EcatImage method)
(nibabel.ecat.EcatImageArrayProxy method)
(nibabel.ecat.EcatSubHeader method)
(nibabel.filebasedimages.FileBasedHeader method)
(nibabel.filebasedimages.FileBasedImage method)
(nibabel.filebasedimages.ImageFileError method)
(nibabel.fileholders.FileHolder method)
(nibabel.fileholders.FileHolderError method)
(nibabel.filename_parser.TypesFilenamesError method)
(nibabel.freesurfer.mghformat.MGHError method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.freesurfer.mghformat.MGHImage method)
(nibabel.gifti.gifti.GiftiCoordSystem method)
(nibabel.gifti.gifti.GiftiDataArray method)
(nibabel.gifti.gifti.GiftiImage method)
(nibabel.gifti.gifti.GiftiLabel method)
(nibabel.gifti.gifti.GiftiLabelTable method)
(nibabel.gifti.gifti.GiftiMetaData method)
(nibabel.gifti.gifti.GiftiNVPairs method)
(nibabel.gifti.parse_gifti_fast.GiftiImageParser method)
(nibabel.gifti.parse_gifti_fast.GiftiParseError method)
(nibabel.gifti.parse_gifti_fast.Outputter method)
(nibabel.imageclasses.ClassMapDict method)
(nibabel.imageclasses.ExtMapRecoder method)
(nibabel.imageglobals.ErrorLevel method)
(nibabel.imageglobals.LoggingOutputSuppressor method)
(nibabel.minc1.Minc1File method)
(nibabel.minc1.Minc1Header method)
(nibabel.minc1.Minc1Image method)
(nibabel.minc1.MincError method)
(nibabel.minc1.MincFile method)
(nibabel.minc1.MincHeader method)
(nibabel.minc1.MincImage method)
(nibabel.minc1.MincImageArrayProxy method)
(nibabel.minc2.Hdf5Bunch method)
(nibabel.minc2.Minc2File method)
(nibabel.minc2.Minc2Header method)
(nibabel.minc2.Minc2Image method)
(nibabel.mriutils.MRIError method)
(nibabel.nicom.csareader.CSAError method)
(nibabel.nicom.csareader.CSAReadError method)
(nibabel.nicom.dicomreaders.DicomReadError method)
(nibabel.nicom.dicomwrappers.MosaicWrapper method)
(nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.SiemensWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
(nibabel.nicom.dicomwrappers.WrapperError method)
(nibabel.nicom.dicomwrappers.WrapperPrecisionError method)
(nibabel.nicom.structreader.Unpacker method)
(nibabel.nifti1.Nifti1DicomExtension method)
(nibabel.nifti1.Nifti1Extension method)
(nibabel.nifti1.Nifti1Extensions method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.nifti1.Nifti1Image method)
(nibabel.nifti1.Nifti1Pair method)
(nibabel.nifti1.Nifti1PairHeader method)
(nibabel.nifti2.Nifti2Header method)
(nibabel.nifti2.Nifti2Image method)
(nibabel.nifti2.Nifti2Pair method)
(nibabel.nifti2.Nifti2PairHeader method)
(nibabel.onetime.OneTimeProperty method)
(nibabel.onetime.ResetMixin method)
(nibabel.openers.BufferedGzipFile method)
(nibabel.openers.ImageOpener method)
(nibabel.openers.Opener method)
(nibabel.orientations.OrientationError method)
(nibabel.parrec.PARRECArrayProxy method)
(nibabel.parrec.PARRECError method)
(nibabel.parrec.PARRECHeader method)
(nibabel.parrec.PARRECImage method)
(nibabel.py3k.FileNotFoundError method)
(nibabel.spatialimages.Header method)
(nibabel.spatialimages.HeaderDataError method)
(nibabel.spatialimages.HeaderTypeError method)
(nibabel.spatialimages.ImageDataError method)
(nibabel.spatialimages.SpatialHeader method)
(nibabel.spatialimages.SpatialImage method)
(nibabel.spm2analyze.Spm2AnalyzeHeader method)
(nibabel.spm2analyze.Spm2AnalyzeImage method)
(nibabel.spm99analyze.Spm99AnalyzeHeader method)
(nibabel.spm99analyze.Spm99AnalyzeImage method)
(nibabel.spm99analyze.SpmAnalyzeHeader method)
(nibabel.streamlines.array_sequence.ArraySequence method)
(nibabel.streamlines.header.Field method)
(nibabel.streamlines.tractogram.LazyDict method)
(nibabel.streamlines.tractogram.LazyTractogram method)
(nibabel.streamlines.tractogram.PerArrayDict method)
(nibabel.streamlines.tractogram.PerArraySequenceDict method)
(nibabel.streamlines.tractogram.SliceableDataDict method)
(nibabel.streamlines.tractogram.Tractogram method)
(nibabel.streamlines.tractogram.TractogramItem method)
(nibabel.streamlines.tractogram_file.DataError method)
(nibabel.streamlines.tractogram_file.ExtensionWarning method)
(nibabel.streamlines.tractogram_file.HeaderError method)
(nibabel.streamlines.tractogram_file.HeaderWarning method)
(nibabel.streamlines.tractogram_file.TractogramFile method)
(nibabel.streamlines.tractogram_file.abstractclassmethod method)
(nibabel.streamlines.trk.TrkFile method)
(nibabel.tmpdirs.InGivenDirectory method)
(nibabel.tmpdirs.InTemporaryDirectory method)
(nibabel.tmpdirs.TemporaryDirectory method)
(nibabel.trackvis.DataError method)
(nibabel.trackvis.HeaderError method)
(nibabel.trackvis.TrackvisFile method)
(nibabel.trackvis.TrackvisFileError method)
(nibabel.tripwire.TripWire method)
(nibabel.tripwire.TripWireError method)
(nibabel.viewers.OrthoSlicer3D method)
(nibabel.volumeutils.BinOpener method)
(nibabel.volumeutils.DtypeMapper method)
(nibabel.volumeutils.Recoder method)
(nibabel.wrapstruct.LabeledWrapStruct method)
(nibabel.wrapstruct.WrapStruct method)
(nibabel.wrapstruct.WrapStructError method)
(nibabel.xmlutils.XmlBasedHeader method)
(nibabel.xmlutils.XmlParser method)
(nibabel.xmlutils.XmlSerializable method)

A

able_int_type() (in module nibabel.casting)
abstractclassmethod (class in nibabel.streamlines.tractogram_file)
adapt_affine() (in module nibabel.processing)
add_codes() (nibabel.volumeutils.Recoder method)
add_gifti_data_array() (nibabel.gifti.gifti.GiftiImage method)
aff2axcodes() (in module nibabel.orientations)
aff_from_hdr() (in module nibabel.trackvis)
aff_to_hdr() (in module nibabel.trackvis)
affine (nibabel.ecat.EcatImage attribute)
(nibabel.spatialimages.SpatialImage attribute)
(nibabel.streamlines.tractogram_file.TractogramFile attribute)
affine_to_rasmm (nibabel.streamlines.tractogram.Tractogram attribute)
AffineError (class in nibabel.affines)
allopen() (in module nibabel.volumeutils)
AnalyzeHeader (class in nibabel.analyze)
AnalyzeImage (class in nibabel.analyze)
angle_axis2euler() (in module nibabel.eulerangles)
angle_axis2mat() (in module nibabel.quaternions)
angle_axis2quat() (in module nibabel.quaternions)
append() (nibabel.streamlines.array_sequence.ArraySequence method)
append_diag() (in module nibabel.affines)
apply_affine() (in module nibabel.affines)
(nibabel.streamlines.tractogram.LazyTractogram method)
(nibabel.streamlines.tractogram.Tractogram method)
apply_orientation() (in module nibabel.orientations)
apply_read_scaling() (in module nibabel.volumeutils)
array (nibabel.arraywriters.ArrayWriter attribute)
array_from_file() (in module nibabel.volumeutils)
array_to_file() (in module nibabel.volumeutils)
ArrayProxy (class in nibabel.arrayproxy)
ArraySequence (class in nibabel.streamlines.array_sequence)
ArrayWriter (class in nibabel.arraywriters)
as_analyze_map() (nibabel.analyze.AnalyzeHeader method)
(nibabel.parrec.PARRECHeader method)
as_byteswapped() (nibabel.wrapstruct.WrapStruct method)
as_closest_canonical() (in module nibabel.funcs)
as_int() (in module nibabel.casting)
asbytes_nested() (in module nibabel.py3k)
asunicode() (in module nibabel.py3k)
asunicode_nested() (in module nibabel.py3k)
auto_attr() (in module nibabel.onetime)
axcodes2ornt() (in module nibabel.orientations)

B

B2q() (in module nibabel.nicom.dwiparams)
b_matrix (nibabel.nicom.dicomwrappers.Wrapper attribute)
b_matrix() (nibabel.nicom.dicomwrappers.SiemensWrapper method)
b_value() (nibabel.nicom.dicomwrappers.Wrapper method)
b_vector() (nibabel.nicom.dicomwrappers.Wrapper method)
BatteryRunner (class in nibabel.batteryrunners)
bench_array_to_file() (in module nibabel.benchmarks.bench_array_to_file)
bench_fileslice() (in module nibabel.benchmarks.bench_fileslice)
bench_finite_range() (in module nibabel.benchmarks.bench_finite_range)
bench_load_save() (in module nibabel.benchmarks.bench_load_save)
bench_load_trk() (in module nibabel.benchmarks.bench_streamlines)
best_float() (in module nibabel.casting)
best_write_scale_ftype() (in module nibabel.volumeutils)
better_float_of() (in module nibabel.volumeutils)
binaryblock (nibabel.freesurfer.mghformat.MGHHeader attribute)
(nibabel.wrapstruct.WrapStruct attribute)
BinOpener (class in nibabel.volumeutils)
Bomber (class in nibabel.data)
BomberError (class in nibabel.data)
BufferedGzipFile (class in nibabel.openers)
bz2_def (nibabel.openers.Opener attribute)

C

CachingError (class in nibabel.dft)
calc_scale() (nibabel.arraywriters.SlopeArrayWriter method)
calc_slicedefs() (in module nibabel.fileslice)
calculate_dwell_time() (in module nibabel.mriutils)
calculate_scale() (in module nibabel.volumeutils)
can_cast() (in module nibabel.volumeutils)
canonical_slicers() (in module nibabel.fileslice)
CastingError (class in nibabel.casting)
ceil_exact() (in module nibabel.casting)
CharacterDataHandler() (nibabel.gifti.parse_gifti_fast.GiftiImageParser method)
(nibabel.xmlutils.XmlParser method)
check_fix() (nibabel.batteryrunners.BatteryRunner method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.wrapstruct.WrapStruct method)
check_only() (nibabel.batteryrunners.BatteryRunner method)
ClassMapDict (class in nibabel.imageclasses)
cleanup() (nibabel.tmpdirs.TemporaryDirectory method)
clear_cache() (in module nibabel.dft)
clim (nibabel.viewers.OrthoSlicer3D attribute)
close() (nibabel.openers.Opener method)
(nibabel.viewers.OrthoSlicer3D method)
close_if_mine() (nibabel.openers.Opener method)
closed (nibabel.openers.Opener attribute)
cmap (nibabel.viewers.OrthoSlicer3D attribute)
common_shape (nibabel.streamlines.array_sequence.ArraySequence attribute)
compress_ext_icase (nibabel.openers.Opener attribute)
compress_ext_map (nibabel.openers.ImageOpener attribute)
(nibabel.openers.Opener attribute)
concat_images() (in module nibabel.funcs)
conjugate() (in module nibabel.quaternions)
copy() (nibabel.filebasedimages.FileBasedHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.parrec.PARRECHeader method)
(nibabel.spatialimages.SpatialHeader method)
(nibabel.streamlines.array_sequence.ArraySequence method)
(nibabel.streamlines.tractogram.LazyTractogram method)
(nibabel.streamlines.tractogram.Tractogram method)
(nibabel.wrapstruct.WrapStruct method)
copy_file_map() (in module nibabel.fileholders)
count() (nibabel.nifti1.Nifti1Extensions method)
create_arraysequences_from_generator() (in module nibabel.streamlines.array_sequence)
create_empty_header() (in module nibabel.streamlines.trk)
CSAError (class in nibabel.nicom.csareader)
CSAReadError (class in nibabel.nicom.csareader)

D

data (nibabel.streamlines.array_sequence.ArraySequence attribute)
(nibabel.streamlines.tractogram.LazyTractogram attribute)
data_from_fileobj() (nibabel.analyze.AnalyzeHeader method)
(nibabel.ecat.EcatSubHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.minc1.MincHeader method)
(nibabel.spatialimages.SpatialHeader method)
data_layout (nibabel.minc1.MincHeader attribute)
(nibabel.spatialimages.SpatialHeader attribute)
data_per_point (nibabel.streamlines.tractogram.LazyTractogram attribute)
(nibabel.streamlines.tractogram.Tractogram attribute)
data_per_streamline (nibabel.streamlines.tractogram.LazyTractogram attribute)
(nibabel.streamlines.tractogram.Tractogram attribute)
data_tag() (in module nibabel.gifti.gifti)
data_to_fileobj() (nibabel.analyze.AnalyzeHeader method)
(nibabel.minc1.MincHeader method)
(nibabel.spatialimages.SpatialHeader method)
DataError (class in nibabel.data)
(class in nibabel.streamlines.tractogram_file)
(class in nibabel.trackvis)
dataobj (nibabel.spatialimages.SpatialImage attribute)
Datasource (class in nibabel.data)
datasource_or_bomber() (in module nibabel.data)
decode_value_from_name() (in module nibabel.streamlines.trk)
default_compresslevel (nibabel.openers.Opener attribute)
default_structarr() (nibabel.analyze.AnalyzeHeader class method)
(nibabel.ecat.EcatHeader class method)
(nibabel.nifti1.Nifti1Header class method)
(nibabel.nifti2.Nifti2Header class method)
(nibabel.spm99analyze.SpmAnalyzeHeader class method)
(nibabel.wrapstruct.WrapStruct class method)
default_x_flip (nibabel.analyze.AnalyzeHeader attribute)
(nibabel.spatialimages.SpatialHeader attribute)
Deprecator (class in nibabel.deprecator)
detect_format() (in module nibabel.streamlines)
DFTError (class in nibabel.dft)
diagnose_binaryblock() (nibabel.wrapstruct.WrapStruct class method)
DicomReadError (class in nibabel.nicom.dicomreaders)
DIMENSIONS (nibabel.streamlines.header.Field attribute)
dot_reduce() (in module nibabel.affines)
draw() (nibabel.viewers.OrthoSlicer3D method)
dtype (nibabel.parrec.PARRECArrayProxy attribute)
DtypeMapper (class in nibabel.volumeutils)

E

EcatHeader (class in nibabel.ecat)
EcatImage (class in nibabel.ecat)
EcatImageArrayProxy (class in nibabel.ecat)
EcatSubHeader (class in nibabel.ecat)
empty_header() (in module nibabel.trackvis)
encode_value_in_name() (in module nibabel.streamlines.trk)
EndElementHandler() (nibabel.gifti.parse_gifti_fast.GiftiImageParser method)
(nibabel.xmlutils.XmlParser method)
ENDIANNESS (nibabel.streamlines.header.Field attribute)
endianness (nibabel.wrapstruct.WrapStruct attribute)
error() (in module nibabel.parrec2nii_cmd)
ErrorLevel (class in nibabel.imageglobals)
ErrorWarnings (class in nibabel.checkwarns)
euler2angle_axis() (in module nibabel.eulerangles)
euler2mat() (in module nibabel.eulerangles)
euler2quat() (in module nibabel.eulerangles)
ExpiredDeprecationError (class in nibabel.deprecator)
extend() (nibabel.streamlines.array_sequence.ArraySequence method)
ExtensionWarning (class in nibabel.streamlines.tractogram_file)
ExtMapRecoder (class in nibabel.imageclasses)
exts2pars() (in module nibabel.parrec)
exts_klass (nibabel.nifti1.Nifti1Header attribute)
eye() (in module nibabel.quaternions)

F

Field (class in nibabel.streamlines.header)
figs (nibabel.viewers.OrthoSlicer3D attribute)
file_like (nibabel.fileholders.FileHolder attribute)
FileBasedHeader (class in nibabel.filebasedimages)
FileBasedImage (class in nibabel.filebasedimages)
FileHolder (class in nibabel.fileholders)
FileHolderError (class in nibabel.fileholders)
fileno() (nibabel.openers.Opener method)
FileNotFoundError (class in nibabel.py3k)
files_types (nibabel.analyze.AnalyzeImage attribute)
(nibabel.ecat.EcatImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
(nibabel.freesurfer.mghformat.MGHImage attribute)
(nibabel.gifti.gifti.GiftiImage attribute)
(nibabel.minc1.Minc1Image attribute)
(nibabel.nifti1.Nifti1Image attribute)
(nibabel.parrec.PARRECImage attribute)
(nibabel.spm99analyze.Spm99AnalyzeImage attribute)
fileslice() (in module nibabel.fileslice)
filespec_to_file_map() (nibabel.filebasedimages.FileBasedImage class method)
(nibabel.freesurfer.mghformat.MGHImage class method)
filespec_to_files() (nibabel.filebasedimages.FileBasedImage class method)
fill_slicer() (in module nibabel.fileslice)
fillpositive() (in module nibabel.quaternions)
finalize_append() (nibabel.streamlines.array_sequence.ArraySequence method)
find_data_dir() (in module nibabel.data)
find_private_section() (in module nibabel.nicom.utils)
finite_range() (in module nibabel.volumeutils)
(nibabel.arraywriters.ArrayWriter method)
flip_axis() (in module nibabel.orientations)
float_to_int() (in module nibabel.casting)
FloatingError (class in nibabel.casting)
floor_exact() (in module nibabel.casting)
floor_log2() (in module nibabel.casting)
flush_chardata() (nibabel.gifti.parse_gifti_fast.GiftiImageParser method)
fname_ext_ul_case() (in module nibabel.volumeutils)
four_to_three() (in module nibabel.funcs)
from_array() (nibabel.gifti.gifti.GiftiDataArray class method)
from_data_func() (nibabel.streamlines.tractogram.LazyTractogram class method)
from_dict() (nibabel.gifti.gifti.GiftiMetaData class method)
from_file() (nibabel.trackvis.TrackvisFile class method)
from_file_map() (nibabel.analyze.AnalyzeImage class method)
(nibabel.ecat.EcatImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
(nibabel.freesurfer.mghformat.MGHImage class method)
(nibabel.gifti.gifti.GiftiImage class method)
(nibabel.minc1.Minc1Image class method)
(nibabel.minc2.Minc2Image class method)
(nibabel.parrec.PARRECImage class method)
(nibabel.spm99analyze.Spm99AnalyzeImage class method)
from_filename() (nibabel.analyze.AnalyzeImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
(nibabel.freesurfer.mghformat.MGHImage class method)
(nibabel.gifti.gifti.GiftiImage class method)
(nibabel.parrec.PARRECImage class method)
from_fileobj() (nibabel.filebasedimages.FileBasedHeader class method)
(nibabel.freesurfer.mghformat.MGHHeader class method)
(nibabel.nifti1.Nifti1Extensions class method)
(nibabel.nifti1.Nifti1Header class method)
(nibabel.parrec.PARRECHeader class method)
(nibabel.spatialimages.SpatialHeader class method)
(nibabel.wrapstruct.WrapStruct class method)
from_files() (nibabel.filebasedimages.FileBasedImage class method)
from_filespec() (nibabel.ecat.EcatImage class method)
from_header() (nibabel.analyze.AnalyzeHeader class method)
(nibabel.filebasedimages.FileBasedHeader class method)
(nibabel.freesurfer.mghformat.MGHHeader class method)
(nibabel.nifti1.Nifti1Header class method)
(nibabel.parrec.PARRECHeader class method)
(nibabel.spatialimages.SpatialHeader class method)
from_image() (nibabel.ecat.EcatImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
(nibabel.spatialimages.SpatialImage class method)
from_matvec() (in module nibabel.affines)
from_tractogram() (nibabel.streamlines.tractogram.LazyTractogram class method)
FutureWarningMixin (class in nibabel.deprecated)
fwhm2sigma() (in module nibabel.processing)

G

get() (nibabel.nicom.dicomwrappers.Wrapper method)
(nibabel.wrapstruct.WrapStruct method)
get_acq_mat_txt() (in module nibabel.nicom.csareader)
get_affine() (nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.minc1.Minc1File method)
(nibabel.nicom.dicomwrappers.Wrapper method)
(nibabel.parrec.PARRECHeader method)
(nibabel.spatialimages.SpatialImage method)
(nibabel.trackvis.TrackvisFile method)
get_affine_from_reference() (in module nibabel.streamlines.utils)
get_affine_rasmm_to_trackvis() (in module nibabel.streamlines.trk)
get_affine_trackvis_to_rasmm() (in module nibabel.streamlines.trk)
get_arrays_from_intent() (nibabel.gifti.gifti.GiftiImage method)
get_b_matrix() (in module nibabel.nicom.csareader)
get_b_value() (in module nibabel.nicom.csareader)
get_base_affine() (nibabel.analyze.AnalyzeHeader method)
(nibabel.spatialimages.SpatialHeader method)
get_best_affine() (nibabel.analyze.AnalyzeHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.spatialimages.SpatialHeader method)
(nibabel.spm99analyze.Spm99AnalyzeHeader method)
get_bvals_bvecs() (nibabel.parrec.PARRECHeader method)
get_code() (nibabel.nifti1.Nifti1Extension method)
get_codes() (nibabel.nifti1.Nifti1Extensions method)
get_content() (nibabel.nifti1.Nifti1Extension method)
get_csa_header() (in module nibabel.nicom.csareader)
get_data() (nibabel.nicom.dicomwrappers.MosaicWrapper method)
(nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
(nibabel.spatialimages.SpatialImage method)
get_data_bytespervox() (nibabel.freesurfer.mghformat.MGHHeader method)
get_data_dtype() (nibabel.analyze.AnalyzeHeader method)
(nibabel.analyze.AnalyzeImage method)
(nibabel.ecat.EcatHeader method)
(nibabel.ecat.EcatImage method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.minc1.Minc1File method)
(nibabel.minc2.Minc2File method)
(nibabel.spatialimages.SpatialHeader method)
(nibabel.spatialimages.SpatialImage method)
get_data_offset() (nibabel.analyze.AnalyzeHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.parrec.PARRECHeader method)
get_data_path() (in module nibabel.data)
get_data_scaling() (nibabel.parrec.PARRECHeader method)
get_data_shape() (nibabel.analyze.AnalyzeHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.minc1.Minc1File method)
(nibabel.minc2.Minc2File method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.nifti2.Nifti2Header method)
(nibabel.spatialimages.SpatialHeader method)
get_data_size() (nibabel.freesurfer.mghformat.MGHHeader method)
get_def() (nibabel.parrec.PARRECHeader method)
get_dim_info() (nibabel.nifti1.Nifti1Header method)
get_echo_train_length() (nibabel.parrec.PARRECHeader method)
get_filename() (nibabel.data.Datasource method)
(nibabel.filebasedimages.FileBasedImage method)
get_filetype() (nibabel.ecat.EcatHeader method)
get_footer_offset() (nibabel.freesurfer.mghformat.MGHHeader method)
get_frame() (nibabel.ecat.EcatImage method)
get_frame_affine() (nibabel.ecat.EcatImage method)
(nibabel.ecat.EcatSubHeader method)
get_frame_order() (in module nibabel.ecat)
get_g_vector() (in module nibabel.nicom.csareader)
get_header() (nibabel.filebasedimages.FileBasedImage method)
get_home_dir() (in module nibabel.environment)
get_ice_dims() (in module nibabel.nicom.csareader)
get_info() (in module nibabel)
get_intent() (nibabel.nifti1.Nifti1Header method)
get_labels_as_dict() (nibabel.gifti.gifti.GiftiLabelTable method)
get_labeltable() (nibabel.gifti.gifti.GiftiImage method)
get_meta() (nibabel.gifti.gifti.GiftiImage method)
get_metadata() (nibabel.gifti.gifti.GiftiDataArray method)
(nibabel.gifti.gifti.GiftiMetaData method)
get_mlist() (nibabel.ecat.EcatImage method)
get_n_mosaic() (in module nibabel.nicom.csareader)
get_n_slices() (nibabel.nifti1.Nifti1Header method)
get_nframes() (nibabel.ecat.EcatSubHeader method)
get_nipy_system_dir() (in module nibabel.environment)
get_nipy_user_dir() (in module nibabel.environment)
get_opt_parser() (in module nibabel.parrec2nii_cmd)
get_origin_affine() (nibabel.spm99analyze.Spm99AnalyzeHeader method)
get_patient_orient() (nibabel.ecat.EcatHeader method)
get_pixel_array() (nibabel.nicom.dicomwrappers.Wrapper method)
get_prepare_fileobj() (nibabel.fileholders.FileHolder method)
get_q_vectors() (nibabel.parrec.PARRECHeader method)
get_qform() (nibabel.nifti1.Nifti1Header method)
(nibabel.nifti1.Nifti1Pair method)
get_qform_quaternion() (nibabel.nifti1.Nifti1Header method)
get_ras2vox() (nibabel.freesurfer.mghformat.MGHHeader method)
get_rec_shape() (nibabel.parrec.PARRECHeader method)
get_rgba() (nibabel.gifti.gifti.GiftiLabel method)
get_scalar() (in module nibabel.nicom.csareader)
get_scaled_data() (nibabel.minc1.Minc1File method)
(nibabel.minc2.Minc2File method)
get_series_framenumbers() (in module nibabel.ecat)
get_sform() (nibabel.nifti1.Nifti1Header method)
(nibabel.nifti1.Nifti1Pair method)
get_shape() (nibabel.ecat.EcatSubHeader method)
(nibabel.spatialimages.SpatialImage method)
get_sizeondisk() (nibabel.nifti1.Nifti1Extension method)
(nibabel.nifti1.Nifti1Extensions method)
get_slice_duration() (nibabel.nifti1.Nifti1Header method)
get_slice_normal() (in module nibabel.nicom.csareader)
get_slice_orientation() (nibabel.parrec.PARRECHeader method)
get_slice_times() (nibabel.nifti1.Nifti1Header method)
get_slope_inter() (in module nibabel.arraywriters)
(nibabel.analyze.AnalyzeHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.spm2analyze.Spm2AnalyzeHeader method)
(nibabel.spm99analyze.SpmAnalyzeHeader method)
get_sorted_slice_indices() (nibabel.parrec.PARRECHeader method)
get_studies() (in module nibabel.dft)
get_subheaders() (nibabel.ecat.EcatImage method)
get_unscaled() (nibabel.arrayproxy.ArrayProxy method)
(nibabel.parrec.PARRECArrayProxy method)
get_value_label() (nibabel.wrapstruct.LabeledWrapStruct method)
get_vector() (in module nibabel.nicom.csareader)
get_volume_labels() (nibabel.parrec.PARRECHeader method)
get_vox2ras() (nibabel.freesurfer.mghformat.MGHHeader method)
get_vox2ras_tkr() (nibabel.freesurfer.mghformat.MGHHeader method)
get_voxel_size() (nibabel.parrec.PARRECHeader method)
get_water_fat_shift() (nibabel.parrec.PARRECHeader method)
get_xyzt_units() (nibabel.nifti1.Nifti1Header method)
get_zooms() (nibabel.analyze.AnalyzeHeader method)
(nibabel.ecat.EcatSubHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.minc1.Minc1File method)
(nibabel.spatialimages.SpatialHeader method)
getArraysFromIntent() (nibabel.gifti.gifti.GiftiImage method)
getexception() (in module nibabel.py3k)
GiftiCoordSystem (class in nibabel.gifti.gifti)
GiftiDataArray (class in nibabel.gifti.gifti)
GiftiImage (class in nibabel.gifti.gifti)
GiftiImageParser (class in nibabel.gifti.parse_gifti_fast)
GiftiLabel (class in nibabel.gifti.gifti)
GiftiLabelTable (class in nibabel.gifti.gifti)
GiftiMetaData (class in nibabel.gifti.gifti)
GiftiNVPairs (class in nibabel.gifti.gifti)
GiftiParseError (class in nibabel.gifti.parse_gifti_fast)
guessed_endian() (nibabel.analyze.AnalyzeHeader class method)
(nibabel.ecat.EcatHeader class method)
(nibabel.wrapstruct.WrapStruct class method)
guessed_image_type() (in module nibabel.loadsave)
gz_def (nibabel.openers.Opener attribute)

H

HANDLER_NAMES (nibabel.xmlutils.XmlParser attribute)
has_affine (nibabel.spm99analyze.Spm99AnalyzeImage attribute)
has_data_intercept (nibabel.analyze.AnalyzeHeader attribute)
(nibabel.nifti1.Nifti1Header attribute)
(nibabel.spm99analyze.SpmAnalyzeHeader attribute)
has_data_slope (nibabel.analyze.AnalyzeHeader attribute)
(nibabel.nifti1.Nifti1Header attribute)
(nibabel.spm99analyze.SpmAnalyzeHeader attribute)
has_nan (nibabel.arraywriters.ArrayWriter attribute)
have_binary128() (in module nibabel.casting)
Hdf5Bunch (class in nibabel.minc2)
Header (class in nibabel.spatialimages)
header (nibabel.arrayproxy.ArrayProxy attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
(nibabel.streamlines.tractogram_file.TractogramFile attribute)
header_class (nibabel.analyze.AnalyzeImage attribute)
(nibabel.ecat.EcatImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
(nibabel.freesurfer.mghformat.MGHImage attribute)
(nibabel.minc1.Minc1Image attribute)
(nibabel.minc2.Minc2Image attribute)
(nibabel.nifti1.Nifti1Image attribute)
(nibabel.nifti1.Nifti1Pair attribute)
(nibabel.nifti2.Nifti2Image attribute)
(nibabel.nifti2.Nifti2Pair attribute)
(nibabel.parrec.PARRECImage attribute)
(nibabel.spatialimages.SpatialImage attribute)
(nibabel.spm2analyze.Spm2AnalyzeImage attribute)
(nibabel.spm99analyze.Spm99AnalyzeImage attribute)
HEADER_SIZE (nibabel.streamlines.trk.TrkFile attribute)
HeaderDataError (class in nibabel.spatialimages)
HeaderError (class in nibabel.streamlines.tractogram_file)
(class in nibabel.trackvis)
HeaderTypeError (class in nibabel.spatialimages)
HeaderWarning (class in nibabel.streamlines.tractogram_file)

I

IgnoreWarnings (class in nibabel.checkwarns)
image_orient_patient() (nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
image_position() (nibabel.nicom.dicomwrappers.MosaicWrapper method)
(nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
image_shape() (nibabel.nicom.dicomwrappers.MosaicWrapper method)
(nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
ImageArrayProxy (nibabel.analyze.AnalyzeImage attribute)
(nibabel.ecat.EcatImage attribute)
(nibabel.freesurfer.mghformat.MGHImage attribute)
(nibabel.minc1.Minc1Image attribute)
(nibabel.parrec.PARRECImage attribute)
ImageDataError (class in nibabel.spatialimages)
ImageFileError (class in nibabel.filebasedimages)
ImageOpener (class in nibabel.openers)
in_memory (nibabel.spatialimages.SpatialImage attribute)
InGivenDirectory (class in nibabel.tmpdirs)
initialize() (nibabel.gifti.parse_gifti_fast.Outputter method)
instance_number() (nibabel.nicom.dicomwrappers.Wrapper method)
instance_to_filename() (nibabel.filebasedimages.FileBasedImage class method)
InstanceStackError (class in nibabel.dft)
int_abs() (in module nibabel.casting)
int_scinter_ftype() (in module nibabel.volumeutils)
int_to_float() (in module nibabel.casting)
InTemporaryDirectory (class in nibabel.tmpdirs)
inter (nibabel.arrayproxy.ArrayProxy attribute)
(nibabel.arraywriters.SlopeInterArrayWriter attribute)
ints2bytes() (in module nibabel.py3k)
inv_ornt_aff() (in module nibabel.orientations)
inverse() (in module nibabel.quaternions)
io_orientation() (in module nibabel.orientations)
is_array_sequence (nibabel.streamlines.array_sequence.ArraySequence attribute)
is_array_sequence() (in module nibabel.streamlines.array_sequence)
is_bad_version() (nibabel.deprecator.Deprecator method)
is_correct_format() (nibabel.streamlines.tractogram_file.TractogramFile class method)
(nibabel.streamlines.trk.TrkFile class method)
is_csa (nibabel.nicom.dicomwrappers.SiemensWrapper attribute)
(nibabel.nicom.dicomwrappers.Wrapper attribute)
is_data_dict() (in module nibabel.streamlines.tractogram)
is_fancy() (in module nibabel.fileslice)
is_lazy_dict() (in module nibabel.streamlines.tractogram)
is_mosaic (nibabel.nicom.dicomwrappers.MosaicWrapper attribute)
(nibabel.nicom.dicomwrappers.Wrapper attribute)
is_mosaic() (in module nibabel.nicom.csareader)
is_multiframe (nibabel.nicom.dicomwrappers.MultiframeWrapper attribute)
(nibabel.nicom.dicomwrappers.Wrapper attribute)
is_ndarray_of_int_or_bool() (in module nibabel.streamlines.array_sequence)
is_proxy (nibabel.arrayproxy.ArrayProxy attribute)
(nibabel.ecat.EcatImageArrayProxy attribute)
(nibabel.minc1.MincImageArrayProxy attribute)
(nibabel.parrec.PARRECArrayProxy attribute)
is_proxy() (in module nibabel.arrayproxy)
is_same_series() (nibabel.nicom.dicomwrappers.Wrapper method)
is_single (nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti1.Nifti1PairHeader attribute)
(nibabel.nifti2.Nifti2PairHeader attribute)
is_supported() (in module nibabel.streamlines)
is_tripwire() (in module nibabel.tripwire)
isfileobj() (in module nibabel.py3k)
isunit() (in module nibabel.quaternions)
items() (nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.wrapstruct.WrapStruct method)

K

keys() (nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.volumeutils.DtypeMapper method)
(nibabel.volumeutils.Recoder method)
(nibabel.wrapstruct.WrapStruct method)
kw_only_func() (in module nibabel.keywordonly)
kw_only_meth() (in module nibabel.keywordonly)

L

LabeledWrapStruct (class in nibabel.wrapstruct)
labeltable (nibabel.gifti.gifti.GiftiImage attribute)
LazyDict (class in nibabel.streamlines.tractogram)
LazyTractogram (class in nibabel.streamlines.tractogram)
link_to() (nibabel.viewers.OrthoSlicer3D method)
list_files() (nibabel.data.Datasource method)
load() (in module nibabel.analyze)
(in module nibabel.ecat)
(in module nibabel.freesurfer.mghformat)
(in module nibabel.loadsave)
(in module nibabel.nifti1)
(in module nibabel.nifti2)
(in module nibabel.parrec)
(in module nibabel.streamlines)
(nibabel.analyze.AnalyzeImage class method)
(nibabel.ecat.EcatImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
(nibabel.freesurfer.mghformat.MGHImage class method)
(nibabel.parrec.PARRECImage class method)
(nibabel.streamlines.array_sequence.ArraySequence class method)
(nibabel.streamlines.tractogram_file.TractogramFile class method)
(nibabel.streamlines.trk.TrkFile class method)
log_raise() (nibabel.batteryrunners.Report method)
LoggingOutputSuppressor (class in nibabel.imageglobals)
longdouble_lte_float64() (in module nibabel.casting)
longdouble_precision_improved() (in module nibabel.casting)

M

MAGIC_NUMBER (nibabel.streamlines.header.Field attribute)
(nibabel.streamlines.trk.TrkFile attribute)
main() (in module nibabel.parrec2nii_cmd)
make_array_writer() (in module nibabel.arraywriters)
make_datasource() (in module nibabel.data)
make_dt_codes() (in module nibabel.volumeutils)
make_file_map() (nibabel.filebasedimages.FileBasedImage class method)
makeable (nibabel.analyze.AnalyzeImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
(nibabel.freesurfer.mghformat.MGHImage attribute)
(nibabel.minc1.Minc1Image attribute)
(nibabel.parrec.PARRECImage attribute)
(nibabel.spm99analyze.Spm99AnalyzeImage attribute)
mat2euler() (in module nibabel.eulerangles)
mat2quat() (in module nibabel.quaternions)
may_contain_header() (nibabel.analyze.AnalyzeHeader class method)
(nibabel.minc1.Minc1Header class method)
(nibabel.minc2.Minc2Header class method)
(nibabel.nifti1.Nifti1Header class method)
(nibabel.nifti2.Nifti2Header class method)
(nibabel.spm2analyze.Spm2AnalyzeHeader class method)
message (nibabel.batteryrunners.Report attribute)
meta (nibabel.gifti.gifti.GiftiImage attribute)
metadata (nibabel.gifti.gifti.GiftiDataArray attribute)
(nibabel.gifti.gifti.GiftiMetaData attribute)
METHOD (nibabel.streamlines.header.Field attribute)
MGHError (class in nibabel.freesurfer.mghformat)
MGHHeader (class in nibabel.freesurfer.mghformat)
MGHImage (class in nibabel.freesurfer.mghformat)
Minc1File (class in nibabel.minc1)
Minc1Header (class in nibabel.minc1)
Minc1Image (class in nibabel.minc1)
Minc2File (class in nibabel.minc2)
Minc2Header (class in nibabel.minc2)
Minc2Image (class in nibabel.minc2)
MincError (class in nibabel.minc1)
MincFile (class in nibabel.minc1)
MincHeader (class in nibabel.minc1)
MincImage (class in nibabel.minc1)
MincImageArrayProxy (class in nibabel.minc1)
mode (nibabel.openers.Opener attribute)
ModuleProxy (class in nibabel.deprecated)
mosaic_to_nii() (in module nibabel.nicom.dicomreaders)
MosaicWrapper (class in nibabel.nicom.dicomwrappers)
MRIError (class in nibabel.mriutils)
mult() (in module nibabel.quaternions)
MultiframeWrapper (class in nibabel.nicom.dicomwrappers)

N

n_volumes (nibabel.viewers.OrthoSlicer3D attribute)
name (nibabel.openers.Opener attribute)
NB_POINTS (nibabel.streamlines.header.Field attribute)
NB_PROPERTIES_PER_STREAMLINE (nibabel.streamlines.header.Field attribute)
NB_SCALARS_PER_POINT (nibabel.streamlines.header.Field attribute)
NB_STREAMLINES (nibabel.streamlines.header.Field attribute)
nearest_pos_semi_def() (in module nibabel.nicom.dwiparams)
nearly_equivalent() (in module nibabel.quaternions)
nibabel (module)
nibabel.affines (module)
nibabel.analyze (module)
nibabel.arrayproxy (module)
nibabel.arraywriters (module)
nibabel.batteryrunners (module)
nibabel.benchmarks (module)
nibabel.benchmarks.bench_array_to_file (module)
nibabel.benchmarks.bench_fileslice (module)
nibabel.benchmarks.bench_finite_range (module)
nibabel.benchmarks.bench_load_save (module)
nibabel.benchmarks.bench_streamlines (module)
nibabel.benchmarks.butils (module)
nibabel.casting (module)
nibabel.checkwarns (module)
nibabel.data (module)
nibabel.deprecated (module)
nibabel.deprecator (module)
nibabel.dft (module)
nibabel.ecat (module)
nibabel.environment (module)
nibabel.eulerangles (module)
nibabel.filebasedimages (module)
nibabel.fileholders (module)
nibabel.filename_parser (module)
nibabel.fileslice (module)
nibabel.fileutils (module)
nibabel.freesurfer (module)
nibabel.freesurfer.io (module)
nibabel.freesurfer.mghformat (module)
nibabel.funcs (module)
nibabel.gifti (module)
nibabel.gifti.gifti (module)
nibabel.gifti.giftiio (module)
nibabel.gifti.parse_gifti_fast (module)
nibabel.gifti.util (module)
nibabel.imageclasses (module)
nibabel.imageglobals (module)
nibabel.keywordonly (module)
nibabel.loadsave (module)
nibabel.minc (module)
nibabel.minc1 (module)
nibabel.minc2 (module)
nibabel.mriutils (module)
nibabel.nicom (module)
nibabel.nicom.csareader (module)
nibabel.nicom.dicomreaders (module)
nibabel.nicom.dicomwrappers (module)
nibabel.nicom.dwiparams (module)
nibabel.nicom.structreader (module)
nibabel.nicom.utils (module)
nibabel.nifti1 (module)
nibabel.nifti2 (module)
nibabel.onetime (module)
nibabel.openers (module)
nibabel.optpkg (module)
nibabel.orientations (module)
nibabel.parrec (module)
nibabel.parrec2nii_cmd (module)
nibabel.processing (module)
nibabel.py3k (module)
nibabel.pydicom_compat (module)
nibabel.quaternions (module)
nibabel.rstutils (module)
nibabel.spaces (module)
nibabel.spatialimages (module)
nibabel.spm2analyze (module)
nibabel.spm99analyze (module)
nibabel.streamlines (module)
nibabel.streamlines.array_sequence (module)
nibabel.streamlines.header (module)
nibabel.streamlines.tractogram (module)
nibabel.streamlines.tractogram_file (module)
nibabel.streamlines.trk (module)
nibabel.streamlines.utils (module)
nibabel.tmpdirs (module)
nibabel.trackvis (module)
nibabel.tripwire (module)
nibabel.viewers (module)
nibabel.volumeutils (module)
nibabel.wrapstruct (module)
nibabel.xmlutils (module)
Nifti1DicomExtension (class in nibabel.nifti1)
Nifti1Extension (class in nibabel.nifti1)
Nifti1Extensions (class in nibabel.nifti1)
Nifti1Header (class in nibabel.nifti1)
Nifti1Image (class in nibabel.nifti1)
Nifti1Pair (class in nibabel.nifti1)
Nifti1PairHeader (class in nibabel.nifti1)
Nifti2Header (class in nibabel.nifti2)
Nifti2Image (class in nibabel.nifti2)
Nifti2Pair (class in nibabel.nifti2)
Nifti2PairHeader (class in nibabel.nifti2)
none_or_close() (in module nibabel.nicom.dicomwrappers)
norm() (in module nibabel.quaternions)
nt_str() (in module nibabel.nicom.csareader)
num_dim (nibabel.gifti.gifti.GiftiDataArray attribute)
numDA (nibabel.gifti.gifti.GiftiImage attribute)

O

offset (nibabel.arrayproxy.ArrayProxy attribute)
ok_floats() (in module nibabel.casting)
on_powerpc() (in module nibabel.casting)
one_line() (in module nibabel.parrec)
OneTimeProperty (class in nibabel.onetime)
open_latin1() (in module nibabel.py3k)
Opener (class in nibabel.openers)
optimize_read_slicers() (in module nibabel.fileslice)
optimize_slicer() (in module nibabel.fileslice)
optional_package() (in module nibabel.optpkg)
order (nibabel.arrayproxy.ArrayProxy attribute)
orientation_affine() (in module nibabel.orientations)
OrientationError (class in nibabel.orientations)
ORIGIN (nibabel.streamlines.header.Field attribute)
ornt2axcodes() (in module nibabel.orientations)
ornt_transform() (in module nibabel.orientations)
OrthoSlicer3D (class in nibabel.viewers)
orthoview() (nibabel.spatialimages.SpatialImage method)
out_dtype (nibabel.arraywriters.ArrayWriter attribute)
Outputter (class in nibabel.gifti.parse_gifti_fast)

P

pair_magic (nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti2.Nifti2Header attribute)
pair_vox_offset (nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti2.Nifti2Header attribute)
PARRECArrayProxy (class in nibabel.parrec)
PARRECError (class in nibabel.parrec)
PARRECHeader (class in nibabel.parrec)
PARRECImage (class in nibabel.parrec)
parse() (nibabel.xmlutils.XmlParser method)
parse_filename() (in module nibabel.filename_parser)
parse_gifti_file() (in module nibabel.gifti.parse_gifti_fast)
parse_PAR_header() (in module nibabel.parrec)
parser (nibabel.gifti.gifti.GiftiImage attribute)
path_maybe_image() (nibabel.filebasedimages.FileBasedImage class method)
pending_data (nibabel.gifti.parse_gifti_fast.GiftiImageParser attribute)
PerArrayDict (class in nibabel.streamlines.tractogram)
PerArraySequenceDict (class in nibabel.streamlines.tractogram)
position (nibabel.viewers.OrthoSlicer3D attribute)
predict_shape() (in module nibabel.fileslice)
pretty_mapping() (in module nibabel.volumeutils)
print_git_title() (in module nibabel.benchmarks.butils)
print_summary() (nibabel.gifti.gifti.GiftiCoordSystem method)
(nibabel.gifti.gifti.GiftiDataArray method)
(nibabel.gifti.gifti.GiftiImage method)
(nibabel.gifti.gifti.GiftiLabelTable method)
(nibabel.gifti.gifti.GiftiMetaData method)
proc_file() (in module nibabel.parrec2nii_cmd)

Q

q2bg() (in module nibabel.nicom.dwiparams)
q_vector (nibabel.nicom.dicomwrappers.Wrapper attribute)
q_vector() (nibabel.nicom.dicomwrappers.SiemensWrapper method)
quat2angle_axis() (in module nibabel.quaternions)
quat2euler() (in module nibabel.eulerangles)
quat2mat() (in module nibabel.quaternions)
quaternion_threshold (nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti2.Nifti2Header attribute)

R

raw_data_from_fileobj() (nibabel.analyze.AnalyzeHeader method)
(nibabel.ecat.EcatSubHeader method)
read() (in module nibabel.gifti.giftiio)
(in module nibabel.nicom.csareader)
(in module nibabel.trackvis)
(nibabel.nicom.structreader.Unpacker method)
(nibabel.openers.Opener method)
read_annot() (in module nibabel.freesurfer.io)
read_data_block() (in module nibabel.gifti.parse_gifti_fast)
read_geometry() (in module nibabel.freesurfer.io)
read_img_data() (in module nibabel.loadsave)
read_label() (in module nibabel.freesurfer.io)
read_mlist() (in module nibabel.ecat)
read_morph_data() (in module nibabel.freesurfer.io)
read_mosaic_dir() (in module nibabel.nicom.dicomreaders)
read_mosaic_dwi_dir() (in module nibabel.nicom.dicomreaders)
read_segments() (in module nibabel.fileslice)
read_subheaders() (in module nibabel.ecat)
read_zt_byte_strings() (in module nibabel.fileutils)
rec2dict() (in module nibabel.volumeutils)
Recoder (class in nibabel.volumeutils)
remove_gifti_data_array() (nibabel.gifti.gifti.GiftiImage method)
remove_gifti_data_array_by_intent() (nibabel.gifti.gifti.GiftiImage method)
Report (class in nibabel.batteryrunners)
resample_from_to() (in module nibabel.processing)
resample_to_output() (in module nibabel.processing)
reset() (nibabel.arraywriters.SlopeArrayWriter method)
(nibabel.arraywriters.SlopeInterArrayWriter method)
(nibabel.onetime.ResetMixin method)
ResetMixin (class in nibabel.onetime)
rgba (nibabel.gifti.gifti.GiftiLabel attribute)
rotate_vector() (in module nibabel.quaternions)
rotation_matrix() (nibabel.nicom.dicomwrappers.Wrapper method)
rst_table() (in module nibabel.rstutils)
run_slices() (in module nibabel.benchmarks.bench_fileslice)
rw (nibabel.analyze.AnalyzeImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
(nibabel.freesurfer.mghformat.MGHImage attribute)
(nibabel.minc1.Minc1Image attribute)
(nibabel.nifti1.Nifti1Pair attribute)
(nibabel.parrec.PARRECImage attribute)
(nibabel.spm99analyze.Spm99AnalyzeImage attribute)

S

same_file_as() (nibabel.fileholders.FileHolder method)
save() (in module nibabel.loadsave)
(in module nibabel.nifti1)
(in module nibabel.nifti2)
(in module nibabel.streamlines)
(nibabel.streamlines.array_sequence.ArraySequence method)
(nibabel.streamlines.tractogram_file.TractogramFile method)
(nibabel.streamlines.trk.TrkFile method)
scale_min_max() (in module nibabel.volumeutils)
scaling_needed() (nibabel.arraywriters.ArrayWriter method)
(nibabel.arraywriters.SlopeArrayWriter method)
ScalingError (class in nibabel.arraywriters)
seek() (nibabel.openers.Opener method)
seek_tell() (in module nibabel.volumeutils)
series_signature() (nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.SiemensWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
set_affine() (nibabel.trackvis.TrackvisFile method)
set_data_dtype() (nibabel.analyze.AnalyzeHeader method)
(nibabel.analyze.AnalyzeImage method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.spatialimages.SpatialHeader method)
(nibabel.spatialimages.SpatialImage method)
set_data_offset() (nibabel.analyze.AnalyzeHeader method)
(nibabel.parrec.PARRECHeader method)
set_data_shape() (nibabel.analyze.AnalyzeHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.nifti2.Nifti2Header method)
(nibabel.spatialimages.SpatialHeader method)
set_dim_info() (nibabel.nifti1.Nifti1Header method)
set_filename() (nibabel.filebasedimages.FileBasedImage method)
set_intent() (nibabel.nifti1.Nifti1Header method)
set_labeltable() (nibabel.gifti.gifti.GiftiImage method)
set_metadata() (nibabel.gifti.gifti.GiftiImage method)
set_origin_from_affine() (nibabel.spm99analyze.Spm99AnalyzeHeader method)
set_position() (nibabel.viewers.OrthoSlicer3D method)
set_qform() (nibabel.nifti1.Nifti1Header method)
(nibabel.nifti1.Nifti1Pair method)
set_sform() (nibabel.nifti1.Nifti1Header method)
(nibabel.nifti1.Nifti1Pair method)
set_slice_duration() (nibabel.nifti1.Nifti1Header method)
set_slice_times() (nibabel.nifti1.Nifti1Header method)
set_slope_inter() (nibabel.analyze.AnalyzeHeader method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.spm99analyze.SpmAnalyzeHeader method)
set_volume_idx() (nibabel.viewers.OrthoSlicer3D method)
set_xyzt_units() (nibabel.nifti1.Nifti1Header method)
set_zooms() (nibabel.analyze.AnalyzeHeader method)
(nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.spatialimages.SpatialHeader method)
setattr_on_read() (in module nibabel.onetime)
shape (nibabel.arrayproxy.ArrayProxy attribute)
(nibabel.ecat.EcatImage attribute)
(nibabel.ecat.EcatImageArrayProxy attribute)
(nibabel.minc1.MincImageArrayProxy attribute)
(nibabel.parrec.PARRECArrayProxy attribute)
(nibabel.spatialimages.SpatialImage attribute)
shape_zoom_affine() (in module nibabel.volumeutils)
shared_range() (in module nibabel.casting)
show() (nibabel.viewers.OrthoSlicer3D method)
shrink_data() (nibabel.streamlines.array_sequence.ArraySequence method)
SiemensWrapper (class in nibabel.nicom.dicomwrappers)
sigma2fwhm() (in module nibabel.processing)
single_magic (nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti2.Nifti2Header attribute)
single_vox_offset (nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti2.Nifti2Header attribute)
sizeof_hdr (nibabel.analyze.AnalyzeHeader attribute)
(nibabel.nifti2.Nifti2Header attribute)
slice2len() (in module nibabel.fileslice)
slice2outax() (in module nibabel.fileslice)
slice2volume() (in module nibabel.spaces)
slice_indicator() (nibabel.nicom.dicomwrappers.Wrapper method)
slice_normal() (nibabel.nicom.dicomwrappers.SiemensWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
SliceableDataDict (class in nibabel.streamlines.tractogram)
slicers2segments() (in module nibabel.fileslice)
slices_to_series() (in module nibabel.nicom.dicomreaders)
slope (nibabel.arrayproxy.ArrayProxy attribute)
(nibabel.arraywriters.SlopeArrayWriter attribute)
SlopeArrayWriter (class in nibabel.arraywriters)
SlopeInterArrayWriter (class in nibabel.arraywriters)
smooth_image() (in module nibabel.processing)
spatial_axes_first() (in module nibabel.imageclasses)
SpatialHeader (class in nibabel.spatialimages)
SpatialImage (class in nibabel.spatialimages)
splitext_addext() (in module nibabel.filename_parser)
Spm2AnalyzeHeader (class in nibabel.spm2analyze)
Spm2AnalyzeImage (class in nibabel.spm2analyze)
Spm99AnalyzeHeader (class in nibabel.spm99analyze)
Spm99AnalyzeImage (class in nibabel.spm99analyze)
SpmAnalyzeHeader (class in nibabel.spm99analyze)
squeeze_image() (in module nibabel.funcs)
StartElementHandler() (nibabel.gifti.parse_gifti_fast.GiftiImageParser method)
(nibabel.xmlutils.XmlParser method)
STEP_SIZE (nibabel.streamlines.header.Field attribute)
streamlines (nibabel.streamlines.tractogram.LazyTractogram attribute)
(nibabel.streamlines.tractogram.Tractogram attribute)
(nibabel.streamlines.tractogram_file.TractogramFile attribute)
strided_scalar() (in module nibabel.fileslice)
structarr (nibabel.wrapstruct.WrapStruct attribute)
supported_np_types() (in module nibabel.spatialimages)
SUPPORTS_DATA_PER_POINT (nibabel.streamlines.trk.TrkFile attribute)
SUPPORTS_DATA_PER_STREAMLINE (nibabel.streamlines.trk.TrkFile attribute)

T

tell() (nibabel.openers.Opener method)
template_dtype (nibabel.analyze.AnalyzeHeader attribute)
(nibabel.ecat.EcatHeader attribute)
(nibabel.freesurfer.mghformat.MGHHeader attribute)
(nibabel.nifti1.Nifti1Header attribute)
(nibabel.nifti2.Nifti2Header attribute)
(nibabel.spm2analyze.Spm2AnalyzeHeader attribute)
(nibabel.spm99analyze.SpmAnalyzeHeader attribute)
(nibabel.wrapstruct.WrapStruct attribute)
TemporaryDirectory (class in nibabel.tmpdirs)
test() (in module nibabel)
threshold_heuristic() (in module nibabel.fileslice)
to_file() (nibabel.trackvis.TrackvisFile method)
to_file_map() (nibabel.analyze.AnalyzeImage method)
(nibabel.ecat.EcatImage method)
(nibabel.filebasedimages.FileBasedImage method)
(nibabel.freesurfer.mghformat.MGHImage method)
(nibabel.gifti.gifti.GiftiImage method)
(nibabel.spm99analyze.Spm99AnalyzeImage method)
to_filename() (nibabel.filebasedimages.FileBasedImage method)
to_fileobj() (nibabel.arraywriters.ArrayWriter method)
(nibabel.arraywriters.SlopeArrayWriter method)
(nibabel.arraywriters.SlopeInterArrayWriter method)
to_files() (nibabel.filebasedimages.FileBasedImage method)
to_filespec() (nibabel.filebasedimages.FileBasedImage method)
to_matvec() (in module nibabel.affines)
to_world() (nibabel.streamlines.tractogram.LazyTractogram method)
(nibabel.streamlines.tractogram.Tractogram method)
to_xml() (nibabel.gifti.gifti.GiftiImage method)
(nibabel.xmlutils.XmlSerializable method)
to_xml_close() (nibabel.gifti.gifti.GiftiDataArray method)
to_xml_open() (nibabel.gifti.gifti.GiftiDataArray method)
total_nb_rows (nibabel.streamlines.array_sequence.ArraySequence attribute)
TrackvisFile (class in nibabel.trackvis)
TrackvisFileError (class in nibabel.trackvis)
Tractogram (class in nibabel.streamlines.tractogram)
tractogram (nibabel.streamlines.tractogram_file.TractogramFile attribute)
TractogramFile (class in nibabel.streamlines.tractogram_file)
TractogramItem (class in nibabel.streamlines.tractogram)
TripWire (class in nibabel.tripwire)
TripWireError (class in nibabel.tripwire)
TrkFile (class in nibabel.streamlines.trk)
type_info() (in module nibabel.casting)
types_filenames() (in module nibabel.filename_parser)
TypesFilenamesError (class in nibabel.filename_parser)

U

ulp() (in module nibabel.casting)
uncache() (nibabel.spatialimages.SpatialImage method)
unpack() (nibabel.nicom.structreader.Unpacker method)
Unpacker (class in nibabel.nicom.structreader)
update_cache() (in module nibabel.dft)
update_header() (nibabel.nifti1.Nifti1Image method)
(nibabel.nifti1.Nifti1Pair method)
(nibabel.spatialimages.SpatialImage method)

V

valid_exts (nibabel.analyze.AnalyzeImage attribute)
(nibabel.ecat.EcatImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
(nibabel.freesurfer.mghformat.MGHImage attribute)
(nibabel.gifti.gifti.GiftiImage attribute)
(nibabel.minc1.Minc1Image attribute)
(nibabel.nifti1.Nifti1Image attribute)
(nibabel.parrec.PARRECImage attribute)
value_set() (nibabel.volumeutils.Recoder method)
values() (nibabel.freesurfer.mghformat.MGHHeader method)
(nibabel.volumeutils.DtypeMapper method)
(nibabel.wrapstruct.WrapStruct method)
verbose() (in module nibabel.parrec2nii_cmd)
VersionedDatasource (class in nibabel.data)
VisibleDeprecationWarning (class in nibabel.deprecated)
vol_is_full() (in module nibabel.parrec)
vol_numbers() (in module nibabel.parrec)
VolumeError (class in nibabel.dft)
vox2out_vox() (in module nibabel.spaces)
VOXEL_ORDER (nibabel.streamlines.header.Field attribute)
VOXEL_SIZES (nibabel.streamlines.header.Field attribute)
voxel_sizes() (in module nibabel.affines)
(nibabel.nicom.dicomwrappers.MultiframeWrapper method)
(nibabel.nicom.dicomwrappers.Wrapper method)
VOXEL_TO_RASMM (nibabel.streamlines.header.Field attribute)

W

warn_message (nibabel.deprecated.FutureWarningMixin attribute)
(nibabel.minc1.MincFile attribute)
(nibabel.minc1.MincImage attribute)
which_analyze_type() (in module nibabel.loadsave)
working_type() (in module nibabel.volumeutils)
Wrapper (class in nibabel.nicom.dicomwrappers)
wrapper_from_data() (in module nibabel.nicom.dicomwrappers)
wrapper_from_file() (in module nibabel.nicom.dicomwrappers)
WrapperError (class in nibabel.nicom.dicomwrappers)
WrapperPrecisionError (class in nibabel.nicom.dicomwrappers)
WrapStruct (class in nibabel.wrapstruct)
WrapStructError (class in nibabel.wrapstruct)
write() (in module nibabel.gifti.giftiio)
(in module nibabel.trackvis)
(nibabel.openers.Opener method)
write_annot() (in module nibabel.freesurfer.io)
write_geometry() (in module nibabel.freesurfer.io)
write_morph_data() (in module nibabel.freesurfer.io)
write_raise() (nibabel.batteryrunners.Report method)
write_to() (nibabel.filebasedimages.FileBasedHeader method)
(nibabel.nifti1.Nifti1Extension method)
(nibabel.nifti1.Nifti1Extensions method)
(nibabel.nifti1.Nifti1Header method)
(nibabel.spatialimages.SpatialHeader method)
(nibabel.wrapstruct.WrapStruct method)
write_zeros() (in module nibabel.volumeutils)
writeftr_to() (nibabel.freesurfer.mghformat.MGHHeader method)
writehdr_to() (nibabel.freesurfer.mghformat.MGHHeader method)
WriterError (class in nibabel.arraywriters)

X

XmlBasedHeader (class in nibabel.xmlutils)
XmlParser (class in nibabel.xmlutils)
XmlSerializable (class in nibabel.xmlutils)