Index

_

__init__() (nitime.analysis.base.BaseAnalyzer method) (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.coherence.MTCoherenceAnalyzer method) (nitime.analysis.coherence.SeedCoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) (nitime.analysis.correlation.CorrelationAnalyzer method) (nitime.analysis.correlation.SeedCorrelationAnalyzer method) (nitime.analysis.event_related.EventRelatedAnalyzer method) (nitime.analysis.granger.GrangerAnalyzer method) (nitime.analysis.normalization.NormalizationAnalyzer method) (nitime.analysis.snr.SNRAnalyzer method) (nitime.analysis.spectral.FilterAnalyzer method) (nitime.analysis.spectral.HilbertAnalyzer method) (nitime.analysis.spectral.MorletWaveletAnalyzer method) (nitime.analysis.spectral.SpectralAnalyzer method) (nitime.descriptors.OneTimeProperty method) (nitime.descriptors.ResetMixin method) (nitime.lazyimports.LazyImport method) (nitime.six.Module_six_moves_urllib method) (nitime.six.Module_six_moves_urllib_error method) (nitime.six.Module_six_moves_urllib_parse method) (nitime.six.Module_six_moves_urllib_request method) (nitime.six.Module_six_moves_urllib_response method) (nitime.six.Module_six_moves_urllib_robotparser method) (nitime.six.MovedAttribute method) (nitime.six.MovedModule method) (nitime.timeseries.Epochs method) (nitime.timeseries.Events method) (nitime.timeseries.Frequency method) (nitime.timeseries.TimeArray method) (nitime.timeseries.TimeInterface method) (nitime.timeseries.TimeSeries method) (nitime.timeseries.TimeSeriesBase method) (nitime.timeseries.TimeSeriesInterface method) (nitime.timeseries.UniformTime method)

A

AbstractBasicAuthHandler (nitime.six.Module_six_moves_urllib_request attribute) AbstractDigestAuthHandler (nitime.six.Module_six_moves_urllib_request attribute) adaptive_weights() (in module nitime.utils) add_metaclass() (in module nitime.six) add_move() (in module nitime.six) addbase (nitime.six.Module_six_moves_urllib_response attribute) addclosehook (nitime.six.Module_six_moves_urllib_response attribute) addinfo (nitime.six.Module_six_moves_urllib_response attribute) addinfourl (nitime.six.Module_six_moves_urllib_response attribute) akaike_information_criterion() (in module nitime.utils) amplitude() (nitime.analysis.spectral.HilbertAnalyzer method) (nitime.analysis.spectral.MorletWaveletAnalyzer method) analytic() (nitime.analysis.spectral.HilbertAnalyzer method) (nitime.analysis.spectral.MorletWaveletAnalyzer method)

antisymm_rand_arr() (in module nitime.utils) AR_est_LD() (in module nitime.algorithms.autoregressive) AR_est_YW() (in module nitime.algorithms.autoregressive) ar_generator() (in module nitime.utils) AR_psd() (in module nitime.algorithms.autoregressive) at() (nitime.timeseries.TimeArray method) (nitime.timeseries.TimeSeries method) (nitime.timeseries.UniformTime method) auto_attr() (in module nitime.descriptors) autocorr() (in module nitime.utils) autocov() (in module nitime.utils) (nitime.analysis.granger.GrangerAnalyzer method) autocov_vector() (in module nitime.utils)

B

BaseAnalyzer (class in nitime.analysis.base) BaseHandler (nitime.six.Module_six_moves_urllib_request attribute)

bayesian_information_criterion() (in module nitime.utils) boxcar_filter() (in module nitime.algorithms.filter) build_opener (nitime.six.Module_six_moves_urllib_request attribute)

C

cache() (nitime.analysis.coherence.SparseCoherenceAnalyzer method) cache_fft() (in module nitime.algorithms.cohere) cache_to_coherency() (in module nitime.algorithms.cohere) cache_to_phase() (in module nitime.algorithms.cohere) cache_to_psd() (in module nitime.algorithms.cohere) cache_to_relative_phase() (in module nitime.algorithms.cohere) CacheFTPHandler (nitime.six.Module_six_moves_urllib_request attribute) causality_xy() (nitime.analysis.granger.GrangerAnalyzer method) causality_yx() (nitime.analysis.granger.GrangerAnalyzer method) circle_to_hz() (in module nitime.utils) circularize() (in module nitime.utils) coherence() (in module nitime.algorithms.cohere) (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.coherence.MTCoherenceAnalyzer method) (nitime.analysis.coherence.SeedCoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) coherence_bavg() (in module nitime.algorithms.cohere) coherence_from_spectral() (in module nitime.algorithms.autoregressive) coherence_partial() (in module nitime.algorithms.cohere) (nitime.analysis.coherence.CoherenceAnalyzer method) coherence_partial_spec() (in module nitime.algorithms.cohere) coherence_regularized() (in module nitime.algorithms.cohere) coherence_spec() (in module nitime.algorithms.cohere) CoherenceAnalyzer (class in nitime.analysis.coherence)

coherency() (in module nitime.algorithms.cohere) (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.coherence.SeedCoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) coherency_bavg() (in module nitime.algorithms.cohere) coherency_phase_delay() (in module nitime.algorithms.cohere) coherency_phase_spectrum() (in module nitime.algorithms.cohere) coherency_regularized() (in module nitime.algorithms.cohere) coherency_spec() (in module nitime.algorithms.cohere) concatenate_time_series() (in module nitime.timeseries) conditional_entropy() (in module nitime.algorithms.entropy) confidence_interval() (nitime.analysis.coherence.MTCoherenceAnalyzer method) ContentTooShortError (nitime.six.Module_six_moves_urllib_error attribute) convert_unit() (nitime.timeseries.TimeArray method) copy() (nitime.timeseries.TimeSeries method) corrcoef() (nitime.analysis.correlation.CorrelationAnalyzer method) (nitime.analysis.correlation.SeedCorrelationAnalyzer method) correlation() (nitime.analysis.snr.SNRAnalyzer method) correlation_spectrum() (in module nitime.algorithms.cohere) CorrelationAnalyzer (class in nitime.analysis.correlation) cpsd() (nitime.analysis.spectral.SpectralAnalyzer method) crosscorr() (in module nitime.utils) crosscov() (in module nitime.utils) crosscov_vector() (in module nitime.utils)

D

data (nitime.timeseries.TimeSeriesBase attribute) (nitime.timeseries.TimeSeriesInterface attribute) dB() (in module nitime.utils) delay() (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.coherence.SeedCoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) detect_lines() (in module nitime.utils) df() (nitime.analysis.coherence.MTCoherenceAnalyzer method) diag_indices() (in module nitime.utils) diag_indices_from() (in module nitime.utils)

dpss_windows() (in module nitime.utils) draw_arrows() (in module nitime.viz) draw_graph() (in module nitime.viz) draw_matrix() (in module nitime.viz) draw_networkx_nodes() (in module nitime.viz) drawgraph_channels() (in module nitime.viz) drawmatrix_channels() (in module nitime.viz) duration() (nitime.timeseries.Epochs method) during() (nitime.timeseries.TimeArray method) (nitime.timeseries.TimeSeries method) (nitime.timeseries.UniformTime method)

E

eigs() (nitime.analysis.coherence.MTCoherenceAnalyzer method) enabled() (in module nitime.lazy) entropy() (in module nitime.algorithms.entropy) entropy_cc() (in module nitime.algorithms.entropy) Epochs (class in nitime.timeseries) error (nitime.six.Module_six_moves_urllib attribute)

error_cov() (nitime.analysis.granger.GrangerAnalyzer method) et_data() (nitime.analysis.event_related.EventRelatedAnalyzer method) eta() (nitime.analysis.event_related.EventRelatedAnalyzer method) ets() (nitime.analysis.event_related.EventRelatedAnalyzer method) EventRelatedAnalyzer (class in nitime.analysis.event_related) Events (class in nitime.timeseries) expected_jk_variance() (in module nitime.utils)

F

FancyURLopener (nitime.six.Module_six_moves_urllib_request attribute) fftconvolve() (in module nitime.utils) FileHandler (nitime.six.Module_six_moves_urllib_request attribute) fill_diagonal() (in module nitime.utils) FilterAnalyzer (class in nitime.analysis.spectral) filtered_boxcar() (nitime.analysis.spectral.FilterAnalyzer method) filtered_fourier() (nitime.analysis.spectral.FilterAnalyzer method) filtfilt() (nitime.analysis.spectral.FilterAnalyzer method) fir() (in module nitime.algorithms.event_related) FIR() (nitime.analysis.event_related.EventRelatedAnalyzer method) fir() (nitime.analysis.spectral.FilterAnalyzer method) fir_design_matrix() (in module nitime.utils)

FIR_estimate() (nitime.analysis.event_related.EventRelatedAnalyzer method) fit_model() (in module nitime.analysis.granger) freq_domain_xcorr() (in module nitime.algorithms.event_related) freq_domain_xcorr_zscored() (in module nitime.algorithms.event_related) freq_response() (in module nitime.algorithms.spectral) frequencies() (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.coherence.MTCoherenceAnalyzer method) (nitime.analysis.coherence.SeedCoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) (nitime.analysis.granger.GrangerAnalyzer method) Frequency (class in nitime.timeseries) from_time_and_data() (nitime.timeseries.TimeSeries static method) FTPHandler (nitime.six.Module_six_moves_urllib_request attribute)

G

gamma_hrf() (in module nitime.fmri.hrf) generate_mar() (in module nitime.utils) get_bounds() (in module nitime.utils) get_freqs() (in module nitime.utils) get_spectra() (in module nitime.algorithms.spectral)

get_spectra_bi() (in module nitime.algorithms.spectral) get_time_unit() (in module nitime.timeseries) getproxies (nitime.six.Module_six_moves_urllib_request attribute) granger_causality_xy() (in module nitime.algorithms.autoregressive) GrangerAnalyzer (class in nitime.analysis.granger)

H

hanning_window_spectrum() (in module nitime.utils) HilbertAnalyzer (class in nitime.analysis.spectral) histogram2d() (in module nitime.index_utils) HTTPBasicAuthHandler (nitime.six.Module_six_moves_urllib_request attribute) HTTPCookieProcessor (nitime.six.Module_six_moves_urllib_request attribute) HTTPDefaultErrorHandler (nitime.six.Module_six_moves_urllib_request attribute) HTTPDigestAuthHandler (nitime.six.Module_six_moves_urllib_request attribute)

HTTPError (nitime.six.Module_six_moves_urllib_error attribute) HTTPErrorProcessor (nitime.six.Module_six_moves_urllib_request attribute) HTTPHandler (nitime.six.Module_six_moves_urllib_request attribute) HTTPPasswordMgr (nitime.six.Module_six_moves_urllib_request attribute) HTTPPasswordMgrWithDefaultRealm (nitime.six.Module_six_moves_urllib_request attribute) HTTPRedirectHandler (nitime.six.Module_six_moves_urllib_request attribute) HTTPSHandler (nitime.six.Module_six_moves_urllib_request attribute)

I

iir() (nitime.analysis.spectral.FilterAnalyzer method) imag() (nitime.analysis.spectral.HilbertAnalyzer method) (nitime.analysis.spectral.MorletWaveletAnalyzer method) index_at() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method) install_opener (nitime.six.Module_six_moves_urllib_request attribute)

interdependence_xy() (in module nitime.algorithms.autoregressive) intersect_coords() (in module nitime.utils) iteritems() (in module nitime.six) iterkeys() (in module nitime.six) iterlists() (in module nitime.six) itervalues() (in module nitime.six)

J

jackknifed_coh_variance() (in module nitime.utils)

jackknifed_sdf_variance() (in module nitime.utils)

L

lab2node() (in module nitime.viz)

LazyImport (class in nitime.lazyimports) lwr_recursion() (in module nitime.algorithms.autoregressive)

M

MAR_est_LWR() (in module nitime.algorithms.autoregressive) mask_indices() (in module nitime.index_utils) (in module nitime.utils) matshow_tseries() (in module nitime.viz) max() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method) mean() (nitime.timeseries.TimeArray method) metadata (nitime.timeseries.TimeSeriesInterface attribute) min() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method) minmax_norm() (in module nitime.utils) mkgraph() (in module nitime.viz) model_coef() (nitime.analysis.granger.GrangerAnalyzer method) Module_six_moves_urllib (class in nitime.six) Module_six_moves_urllib_error (class in nitime.six) Module_six_moves_urllib_parse (class in nitime.six) Module_six_moves_urllib_request (class in nitime.six)

Module_six_moves_urllib_response (class in nitime.six) Module_six_moves_urllib_robotparser (class in nitime.six) MorletWaveletAnalyzer (class in nitime.analysis.spectral) MovedAttribute (class in nitime.six) MovedModule (class in nitime.six) mt_coherence() (nitime.analysis.snr.SNRAnalyzer method) mt_frequencies() (nitime.analysis.snr.SNRAnalyzer method) mt_information() (nitime.analysis.snr.SNRAnalyzer method) mt_noise_psd() (nitime.analysis.snr.SNRAnalyzer method) mt_signal_psd() (nitime.analysis.snr.SNRAnalyzer method) mt_snr() (nitime.analysis.snr.SNRAnalyzer method) MTCoherenceAnalyzer (class in nitime.analysis.coherence) mtm_cross_spectrum() (in module nitime.algorithms.spectral) multi_intersect() (in module nitime.utils) multi_taper_csd() (in module nitime.algorithms.spectral) multi_taper_psd() (in module nitime.algorithms.spectral) mutual_information() (in module nitime.algorithms.entropy)

N

nifti_from_time_series() (in module nitime.fmri.io) nitime.algorithms.autoregressive (module) nitime.algorithms.cohere (module) nitime.algorithms.correlation (module) nitime.algorithms.entropy (module) nitime.algorithms.event_related (module) nitime.algorithms.filter (module) nitime.algorithms.spectral (module) nitime.algorithms.wavelet (module) nitime.analysis.base (module) nitime.analysis.coherence (module) nitime.analysis.correlation (module) nitime.analysis.event_related (module) nitime.analysis.granger (module) nitime.analysis.normalization (module)

nitime.analysis.snr (module) nitime.analysis.spectral (module) nitime.descriptors (module) nitime.fmri.hrf (module) nitime.fmri.io (module) nitime.index_utils (module) nitime.lazy (module) nitime.lazyimports (module) nitime.six (module) nitime.timeseries (module) nitime.utils (module) nitime.viz (module) normal_coherence_to_unit() (in module nitime.utils) NormalizationAnalyzer (class in nitime.analysis.normalization) normalize_coherence() (in module nitime.utils)

O

OneTimeProperty (class in nitime.descriptors)

OpenerDirector (nitime.six.Module_six_moves_urllib_request attribute) order() (nitime.analysis.granger.GrangerAnalyzer method)

P

parameterlist() (nitime.analysis.base.BaseAnalyzer method) parameters (nitime.analysis.base.BaseAnalyzer attribute) parse (nitime.six.Module_six_moves_urllib attribute) parse_qs (nitime.six.Module_six_moves_urllib_parse attribute) parse_qsl (nitime.six.Module_six_moves_urllib_parse attribute) ParseResult (nitime.six.Module_six_moves_urllib_parse attribute) pathname2url (nitime.six.Module_six_moves_urllib_request attribute) percent_change() (in module nitime.utils) (nitime.analysis.normalization.NormalizationAnalyzer method) periodogram() (in module nitime.algorithms.spectral) (nitime.analysis.spectral.SpectralAnalyzer method) periodogram_csd() (in module nitime.algorithms.spectral) phase() (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.spectral.HilbertAnalyzer method) (nitime.analysis.spectral.MorletWaveletAnalyzer method)

phases() (nitime.analysis.coherence.SparseCoherenceAnalyzer method) plot_corr_diff() (in module nitime.viz) plot_snr() (in module nitime.viz) plot_snr_diff() (in module nitime.viz) plot_spectral_estimate() (in module nitime.viz) plot_tseries() (in module nitime.viz) plot_xcorr() (in module nitime.viz) polonsky_hrf() (in module nitime.fmri.hrf) prod() (nitime.timeseries.TimeArray method) ProxyBasicAuthHandler (nitime.six.Module_six_moves_urllib_request attribute) ProxyDigestAuthHandler (nitime.six.Module_six_moves_urllib_request attribute) ProxyHandler (nitime.six.Module_six_moves_urllib_request attribute) psd() (nitime.analysis.spectral.SpectralAnalyzer method) ptp() (nitime.timeseries.TimeArray method)

Q

quote (nitime.six.Module_six_moves_urllib_parse attribute)

quote_plus (nitime.six.Module_six_moves_urllib_parse attribute)

R

real() (nitime.analysis.spectral.HilbertAnalyzer method) (nitime.analysis.spectral.MorletWaveletAnalyzer method) relative_phases() (nitime.analysis.coherence.SeedCoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) remove_bias() (in module nitime.utils) remove_move() (in module nitime.six) request (nitime.six.Module_six_moves_urllib attribute)

Request (nitime.six.Module_six_moves_urllib_request attribute) rescale_arr() (in module nitime.utils) reset() (nitime.descriptors.ResetMixin method) ResetMixin (class in nitime.descriptors) response (nitime.six.Module_six_moves_urllib attribute) rgb_to_dict() (in module nitime.viz) RobotFileParser (nitime.six.Module_six_moves_urllib_robotparser attribute) robotparser (nitime.six.Module_six_moves_urllib attribute)

S

seed_corrcoef() (in module nitime.algorithms.correlation) SeedCoherenceAnalyzer (class in nitime.analysis.coherence) SeedCorrelationAnalyzer (class in nitime.analysis.correlation) set_input() (nitime.analysis.base.BaseAnalyzer method) shape (nitime.timeseries.TimeSeries attribute) signal_noise() (in module nitime.analysis.snr) simultaneous_causality() (nitime.analysis.granger.GrangerAnalyzer method) slice_during() (nitime.timeseries.TimeArray method) (nitime.timeseries.UniformTime method) SNRAnalyzer (class in nitime.analysis.snr) SparseCoherenceAnalyzer (class in nitime.analysis.coherence) spectra() (nitime.analysis.coherence.MTCoherenceAnalyzer method) spectral_matrix() (nitime.analysis.granger.GrangerAnalyzer method) spectral_matrix_xy() (in module nitime.algorithms.autoregressive)

SpectralAnalyzer (class in nitime.analysis.spectral) spectrum() (nitime.analysis.coherence.CoherenceAnalyzer method) (nitime.analysis.coherence.SparseCoherenceAnalyzer method) spectrum_fourier() (nitime.analysis.spectral.SpectralAnalyzer method) spectrum_multi_taper() (nitime.analysis.spectral.SpectralAnalyzer method) square_window_spectrum() (in module nitime.utils) start (nitime.timeseries.Epochs attribute) std() (nitime.timeseries.TimeArray method) stop (nitime.timeseries.Epochs attribute) str_tspec() (in module nitime.timeseries) str_valid_tspecs() (in module nitime.timeseries) structured_rand_arr() (in module nitime.utils) subcolormap() (in module nitime.viz) sum() (nitime.timeseries.TimeArray method) symm_rand_arr() (in module nitime.utils)

T

tapered_spectra() (in module nitime.utils) tapers() (nitime.analysis.coherence.MTCoherenceAnalyzer method) target_cache() (nitime.analysis.coherence.SeedCoherenceAnalyzer method) threshold_arr() (in module nitime.utils) thresholded_arr() (in module nitime.utils) time (nitime.timeseries.TimeSeriesInterface attribute) time() (nitime.timeseries.TimeSeries method) time_series_from_file() (in module nitime.fmri.io) time_unit (nitime.timeseries.TimeInterface attribute) TimeArray (class in nitime.timeseries) TimeInterface (class in nitime.timeseries) TimeSeries (class in nitime.timeseries) TimeSeriesBase (class in nitime.timeseries) TimeSeriesInterface (class in nitime.timeseries)

to_period() (nitime.timeseries.Frequency method) transfer_entropy() (in module nitime.algorithms.entropy) transfer_function_xy() (in module nitime.algorithms.autoregressive) tri() (in module nitime.index_utils) tridi_inverse_iteration() (in module nitime.utils) tril() (in module nitime.index_utils) tril_indices() (in module nitime.index_utils) (in module nitime.utils) tril_indices_from() (in module nitime.index_utils) (in module nitime.utils) triu() (in module nitime.index_utils) triu_indices() (in module nitime.index_utils) (in module nitime.utils) triu_indices_from() (in module nitime.index_utils) (in module nitime.utils)

U

UniformTime (class in nitime.timeseries) UnknownHandler (nitime.six.Module_six_moves_urllib_request attribute) unquote (nitime.six.Module_six_moves_urllib_parse attribute) unquote_plus (nitime.six.Module_six_moves_urllib_parse attribute) unwrap_phases() (in module nitime.utils) url2pathname (nitime.six.Module_six_moves_urllib_request attribute) urlcleanup (nitime.six.Module_six_moves_urllib_request attribute) urldefrag (nitime.six.Module_six_moves_urllib_parse attribute) urlencode (nitime.six.Module_six_moves_urllib_parse attribute)

URLError (nitime.six.Module_six_moves_urllib_error attribute) urljoin (nitime.six.Module_six_moves_urllib_parse attribute) urlopen (nitime.six.Module_six_moves_urllib_request attribute) URLopener (nitime.six.Module_six_moves_urllib_request attribute) urlparse (nitime.six.Module_six_moves_urllib_parse attribute) urlretrieve (nitime.six.Module_six_moves_urllib_request attribute) urlsplit (nitime.six.Module_six_moves_urllib_parse attribute) urlunparse (nitime.six.Module_six_moves_urllib_parse attribute) urlunsplit (nitime.six.Module_six_moves_urllib_parse attribute)

V

vander() (in module nitime.index_utils)

var() (nitime.timeseries.TimeArray method)

W

weights() (nitime.analysis.coherence.MTCoherenceAnalyzer method) wfmorlet_fft() (in module nitime.algorithms.wavelet) winspect() (in module nitime.viz)

with_metaclass() (in module nitime.six) wlogmorlet() (in module nitime.algorithms.wavelet) wlogmorlet_fft() (in module nitime.algorithms.wavelet) wmorlet() (in module nitime.algorithms.wavelet)

X

xcorr() (nitime.analysis.correlation.CorrelationAnalyzer method)

xcorr_eta() (nitime.analysis.event_related.EventRelatedAnalyzer method) xcorr_norm() (nitime.analysis.correlation.CorrelationAnalyzer method)

Z

z_score() (nitime.analysis.normalization.NormalizationAnalyzer method)

zero_pad() (in module nitime.utils) zscore() (in module nitime.utils)