openers
¶
Context manager openers for various fileobject types
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Deterministic variant of GzipFile |
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Opener-type class to collect extra compressed extensions |
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Class to accept, maybe open, and context-manage file-likes / filenames |
DeterministicGzipFile
¶
- class nibabel.openers.DeterministicGzipFile(filename: str | None = None, mode: Mode | None = None, compresslevel: int = 9, fileobj: io.FileIO | None = None, mtime: int = 0)¶
Bases:
GzipFile
Deterministic variant of GzipFile
This writer does not add filename information to the header, and defaults to a modification time (
mtime
) of 0 seconds.Constructor for the GzipFile class.
At least one of fileobj and filename must be given a non-trivial value.
The new class instance is based on fileobj, which can be a regular file, an io.BytesIO object, or any other object which simulates a file. It defaults to None, in which case filename is opened to provide a file object.
When fileobj is not None, the filename argument is only used to be included in the gzip file header, which may include the original filename of the uncompressed file. It defaults to the filename of fileobj, if discernible; otherwise, it defaults to the empty string, and in this case the original filename is not included in the header.
The mode argument can be any of ‘r’, ‘rb’, ‘a’, ‘ab’, ‘w’, ‘wb’, ‘x’, or ‘xb’ depending on whether the file will be read or written. The default is the mode of fileobj if discernible; otherwise, the default is ‘rb’. A mode of ‘r’ is equivalent to one of ‘rb’, and similarly for ‘w’ and ‘wb’, ‘a’ and ‘ab’, and ‘x’ and ‘xb’.
The compresslevel argument is an integer from 0 to 9 controlling the level of compression; 1 is fastest and produces the least compression, and 9 is slowest and produces the most compression. 0 is no compression at all. The default is 9.
The mtime argument is an optional numeric timestamp to be written to the last modification time field in the stream when compressing. If omitted or None, the current time is used.
- __init__(filename: str | None = None, mode: Mode | None = None, compresslevel: int = 9, fileobj: io.FileIO | None = None, mtime: int = 0)¶
Constructor for the GzipFile class.
At least one of fileobj and filename must be given a non-trivial value.
The new class instance is based on fileobj, which can be a regular file, an io.BytesIO object, or any other object which simulates a file. It defaults to None, in which case filename is opened to provide a file object.
When fileobj is not None, the filename argument is only used to be included in the gzip file header, which may include the original filename of the uncompressed file. It defaults to the filename of fileobj, if discernible; otherwise, it defaults to the empty string, and in this case the original filename is not included in the header.
The mode argument can be any of ‘r’, ‘rb’, ‘a’, ‘ab’, ‘w’, ‘wb’, ‘x’, or ‘xb’ depending on whether the file will be read or written. The default is the mode of fileobj if discernible; otherwise, the default is ‘rb’. A mode of ‘r’ is equivalent to one of ‘rb’, and similarly for ‘w’ and ‘wb’, ‘a’ and ‘ab’, and ‘x’ and ‘xb’.
The compresslevel argument is an integer from 0 to 9 controlling the level of compression; 1 is fastest and produces the least compression, and 9 is slowest and produces the most compression. 0 is no compression at all. The default is 9.
The mtime argument is an optional numeric timestamp to be written to the last modification time field in the stream when compressing. If omitted or None, the current time is used.
Fileish
¶
ImageOpener
¶
- class nibabel.openers.ImageOpener(fileish: str | IOBase, *args, **kwargs)¶
Bases:
Opener
Opener-type class to collect extra compressed extensions
A trivial sub-class of opener to which image classes can add extra extensions with custom openers, such as compressed openers.
To add an extension, add a line to the class definition (not __init__):
ImageOpener.compress_ext_map[ext] = func_def
ext
is a file extension beginning with ‘.’ and should be included in the image class’svalid_exts
tuple.func_def
is a (function, (args,)) tuple, where function accepts a filename as the first parameter, and `args defines the other arguments that function accepts. These arguments must be any (unordered) subset of mode, compresslevel, and buffering.- compress_ext_map: dict[str | None, OpenerDef] = {'.bz2': (<class 'bz2.BZ2File'>, ('mode', 'buffering', 'compresslevel')), '.gz': (<function _gzip_open>, ('mode', 'compresslevel', 'mtime', 'keep_open')), '.mgz': (<function _gzip_open>, ('mode', 'compresslevel', 'mtime', 'keep_open')), '.zst': (<function _zstd_open>, ('mode', 'level_or_option', 'zstd_dict')), None: (<built-in function open>, ('mode', 'buffering'))}¶
Opener
¶
- class nibabel.openers.Opener(fileish: str | IOBase, *args, **kwargs)¶
Bases:
object
Class to accept, maybe open, and context-manage file-likes / filenames
Provides context manager to close files that the constructor opened for you.
- Parameters:
- fileishstr or file-like
if str, then open with suitable opening method. If file-like, accept as is
- *argspositional arguments
passed to opening method when fileish is str.
mode
, if not specified, is rb.compresslevel
, if relevant, and not specified, is set from class variabledefault_compresslevel
.keep_open
, if relevant, and not specified, isFalse
.- **kwargskeyword arguments
passed to opening method when fileish is str. Change of defaults as for *args
- bz2_def = (<class 'bz2.BZ2File'>, ('mode', 'buffering', 'compresslevel'))¶
- compress_ext_map: dict[str | None, OpenerDef] = {'.bz2': (<class 'bz2.BZ2File'>, ('mode', 'buffering', 'compresslevel')), '.gz': (<function _gzip_open>, ('mode', 'compresslevel', 'mtime', 'keep_open')), '.zst': (<function _zstd_open>, ('mode', 'level_or_option', 'zstd_dict')), None: (<built-in function open>, ('mode', 'buffering'))}¶
- default_compresslevel = 1¶
default compression level when writing gz and bz2 files
- default_level_or_option = {'r': None, 'rb': None, 'w': 3, 'wb': 3}¶
- default_zst_compresslevel = 3¶
default option for zst files
- gz_def = (<function _gzip_open>, ('mode', 'compresslevel', 'mtime', 'keep_open'))¶
- property name: str | None¶
Return
self.fobj.name
or self._name if not presentself._name will be None if object was created with a fileobj, otherwise it will be the filename.
- zstd_def = (<function _zstd_open>, ('mode', 'level_or_option', 'zstd_dict'))¶