Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z _ __init__() (nibabel._compression.DeterministicGzipFile method) (nibabel.affines.AffineError method) (nibabel.analyze.AnalyzeHeader method) (nibabel.analyze.AnalyzeImage method) (nibabel.arrayproxy.ArrayLike method) (nibabel.arrayproxy.ArrayProxy method) (nibabel.arraywriters.ArrayWriter method) (nibabel.arraywriters.ScalingError method) (nibabel.arraywriters.SlopeArrayWriter method) (nibabel.arraywriters.SlopeInterArrayWriter method) (nibabel.arraywriters.WriterError method) (nibabel.batteryrunners.BatteryRunner method) (nibabel.batteryrunners.Report method) (nibabel.brikhead.AFNIArrayProxy method) (nibabel.brikhead.AFNIHeader method) (nibabel.brikhead.AFNIHeaderError method) (nibabel.brikhead.AFNIImage method) (nibabel.brikhead.AFNIImageError method) (nibabel.caret.CaretMetaData method) (nibabel.casting.CastingError method) (nibabel.casting.FloatingError method) (nibabel.cifti2.cifti2.Cifti2BrainModel method) (nibabel.cifti2.cifti2.Cifti2Header method) (nibabel.cifti2.cifti2.Cifti2HeaderError method) (nibabel.cifti2.cifti2.Cifti2Image method) (nibabel.cifti2.cifti2.Cifti2Label method) (nibabel.cifti2.cifti2.Cifti2LabelTable method) (nibabel.cifti2.cifti2.Cifti2Matrix method) (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap method) (nibabel.cifti2.cifti2.Cifti2MetaData method) (nibabel.cifti2.cifti2.Cifti2NamedMap method) (nibabel.cifti2.cifti2.Cifti2Parcel method) (nibabel.cifti2.cifti2.Cifti2Surface method) (nibabel.cifti2.cifti2.Cifti2TransformationMatrixVoxelIndicesIJKtoXYZ method) (nibabel.cifti2.cifti2.Cifti2VertexIndices method) (nibabel.cifti2.cifti2.Cifti2Vertices method) (nibabel.cifti2.cifti2.Cifti2Volume method) (nibabel.cifti2.cifti2.Cifti2VoxelIndicesIJK method) (nibabel.cifti2.cifti2.LimitedNifti2Header method) (nibabel.cifti2.cifti2_axes.Axis method) (nibabel.cifti2.cifti2_axes.BrainModelAxis method) (nibabel.cifti2.cifti2_axes.LabelAxis method) (nibabel.cifti2.cifti2_axes.ParcelsAxis method) (nibabel.cifti2.cifti2_axes.ScalarAxis method) (nibabel.cifti2.cifti2_axes.SeriesAxis method) (nibabel.cifti2.parse_cifti2.Cifti2Extension method) (nibabel.cifti2.parse_cifti2.Cifti2Parser method) (nibabel.cmdline.dicomfs.DICOMFS method) (nibabel.cmdline.dicomfs.dummy_fuse method) (nibabel.cmdline.dicomfs.FileHandle method) (nibabel.data.Bomber method) (nibabel.data.BomberError method) (nibabel.data.DataError method) (nibabel.data.Datasource method) (nibabel.data.VersionedDatasource method) (nibabel.dataobj_images.DataobjImage method) (nibabel.deprecated.FutureWarningMixin method) (nibabel.deprecated.ModuleProxy method) (nibabel.deprecated.VisibleDeprecationWarning method) (nibabel.deprecator.Deprecator method) (nibabel.deprecator.ExpiredDeprecationError method) (nibabel.dft.CachingError method) (nibabel.dft.DFTError method) (nibabel.dft.InstanceStackError method) (nibabel.dft.VolumeError method) (nibabel.ecat.EcatHeader method) (nibabel.ecat.EcatImage method) (nibabel.ecat.EcatImageArrayProxy method) (nibabel.ecat.EcatSubHeader method) (nibabel.filebasedimages.FileBasedHeader method) (nibabel.filebasedimages.FileBasedImage method) (nibabel.filebasedimages.ImageFileError method) (nibabel.filebasedimages.SerializableImage method) (nibabel.fileholders.FileHolder method) (nibabel.fileholders.FileHolderError method) (nibabel.filename_parser.TypesFilenamesError method) (nibabel.freesurfer.mghformat.MGHError method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.freesurfer.mghformat.MGHImage method) (nibabel.gifti.gifti.GiftiCoordSystem method) (nibabel.gifti.gifti.GiftiDataArray method) (nibabel.gifti.gifti.GiftiImage method) (nibabel.gifti.gifti.GiftiLabel method) (nibabel.gifti.gifti.GiftiLabelTable method) (nibabel.gifti.gifti.GiftiMetaData method) (nibabel.gifti.gifti.GiftiNVPairs method) (nibabel.gifti.parse_gifti_fast.GiftiImageParser method) (nibabel.gifti.parse_gifti_fast.GiftiParseError method) (nibabel.imageglobals.ErrorLevel method) (nibabel.imageglobals.LoggingOutputSuppressor method) (nibabel.minc1.Minc1File method) (nibabel.minc1.Minc1Header method) (nibabel.minc1.Minc1Image method) (nibabel.minc1.MincError method) (nibabel.minc1.MincHeader method) (nibabel.minc1.MincImageArrayProxy method) (nibabel.minc2.Hdf5Bunch method) (nibabel.minc2.Minc2File method) (nibabel.minc2.Minc2Header method) (nibabel.minc2.Minc2Image method) (nibabel.mriutils.MRIError method) (nibabel.nicom.ascconv.AscconvParseError method) (nibabel.nicom.ascconv.Atom method) (nibabel.nicom.ascconv.NoValue method) (nibabel.nicom.csareader.CSAError method) (nibabel.nicom.csareader.CSAReadError method) (nibabel.nicom.dicomreaders.DicomReadError method) (nibabel.nicom.dicomwrappers.FilterDwiIso method) (nibabel.nicom.dicomwrappers.FilterMultiStack method) (nibabel.nicom.dicomwrappers.FrameFilter method) (nibabel.nicom.dicomwrappers.MosaicWrapper method) (nibabel.nicom.dicomwrappers.MultiframeWrapper method) (nibabel.nicom.dicomwrappers.SiemensWrapper method) (nibabel.nicom.dicomwrappers.Wrapper method) (nibabel.nicom.dicomwrappers.WrapperError method) (nibabel.nicom.dicomwrappers.WrapperPrecisionError method) (nibabel.nicom.structreader.Unpacker method) (nibabel.nicom.utils.Vendor method) (nibabel.nifti1.Nifti1DicomExtension method) (nibabel.nifti1.Nifti1Extension method) (nibabel.nifti1.Nifti1Extensions method) (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.Nifti1Image method) (nibabel.nifti1.Nifti1Pair method) (nibabel.nifti1.Nifti1PairHeader method) (nibabel.nifti1.NiftiExtension method) (nibabel.nifti2.Nifti2Header method) (nibabel.nifti2.Nifti2Image method) (nibabel.nifti2.Nifti2Pair method) (nibabel.nifti2.Nifti2PairHeader method) (nibabel.onetime.ResetMixin method) (nibabel.openers.Fileish method) (nibabel.openers.ImageOpener method) (nibabel.openers.Opener method) (nibabel.orientations.OrientationError method) (nibabel.parrec.PARRECArrayProxy method) (nibabel.parrec.PARRECError method) (nibabel.parrec.PARRECHeader method) (nibabel.parrec.PARRECImage method) (nibabel.pointset.CoordinateArray method) (nibabel.pointset.Grid method) (nibabel.pointset.GridIndices method) (nibabel.pointset.Pointset method) (nibabel.spatialimages.HasDtype method) (nibabel.spatialimages.HeaderDataError method) (nibabel.spatialimages.HeaderTypeError method) (nibabel.spatialimages.ImageDataError method) (nibabel.spatialimages.SpatialFirstSlicer method) (nibabel.spatialimages.SpatialHeader method) (nibabel.spatialimages.SpatialImage method) (nibabel.spatialimages.SpatialProtocol method) (nibabel.spm2analyze.Spm2AnalyzeHeader method) (nibabel.spm2analyze.Spm2AnalyzeImage method) (nibabel.spm99analyze.Spm99AnalyzeHeader method) (nibabel.spm99analyze.Spm99AnalyzeImage method) (nibabel.spm99analyze.SpmAnalyzeHeader method) (nibabel.streamlines.array_sequence.ArraySequence method) (nibabel.streamlines.header.Field method) (nibabel.streamlines.tck.TckFile method) (nibabel.streamlines.tractogram.LazyDict method) (nibabel.streamlines.tractogram.LazyTractogram method) (nibabel.streamlines.tractogram.PerArrayDict method) (nibabel.streamlines.tractogram.PerArraySequenceDict method) (nibabel.streamlines.tractogram.SliceableDataDict method) (nibabel.streamlines.tractogram.Tractogram method) (nibabel.streamlines.tractogram.TractogramItem method) (nibabel.streamlines.tractogram_file.abstractclassmethod method) (nibabel.streamlines.tractogram_file.DataError method) (nibabel.streamlines.tractogram_file.DataWarning method) (nibabel.streamlines.tractogram_file.ExtensionWarning method) (nibabel.streamlines.tractogram_file.HeaderError method) (nibabel.streamlines.tractogram_file.HeaderWarning method) (nibabel.streamlines.tractogram_file.TractogramFile method) (nibabel.streamlines.trk.TrkFile method) (nibabel.tmpdirs.TemporaryDirectory method) (nibabel.tripwire.TripWire method) (nibabel.tripwire.TripWireError method) (nibabel.viewers.OrthoSlicer3D method) (nibabel.volumeutils.DtypeMapper method) (nibabel.volumeutils.Recoder method) (nibabel.wrapstruct.LabeledWrapStruct method) (nibabel.wrapstruct.WrapStruct method) (nibabel.wrapstruct.WrapStructError method) (nibabel.xmlutils.XmlBasedHeader method) (nibabel.xmlutils.XmlParser method) (nibabel.xmlutils.XmlSerializable method) A able_int_type() (in module nibabel.casting) abstractclassmethod (class in nibabel.streamlines.tractogram_file) adapt_affine() (in module nibabel.processing) add_codes() (nibabel.volumeutils.Recoder method) add_gifti_data_array() (nibabel.gifti.gifti.GiftiImage method) aff2axcodes() (in module nibabel.orientations) affine (nibabel.cifti2.cifti2_axes.BrainModelAxis property) (nibabel.cifti2.cifti2_axes.ParcelsAxis property) (nibabel.ecat.EcatImage property) (nibabel.nicom.dicomwrappers.Wrapper property) (nibabel.pointset.Pointset attribute) (nibabel.spatialimages.SpatialImage property) (nibabel.streamlines.tractogram_file.TractogramFile property) affine_to_rasmm (nibabel.streamlines.tractogram.Tractogram property) AffineError (class in nibabel.affines) AFNIArrayProxy (class in nibabel.brikhead) AFNIHeader (class in nibabel.brikhead) AFNIHeaderError (class in nibabel.brikhead) AFNIImage (class in nibabel.brikhead) AFNIImageError (class in nibabel.brikhead) agg_data() (nibabel.gifti.gifti.GiftiImage method) alert_future_error() (in module nibabel.deprecated) AnalyzeHeader (class in nibabel.analyze) AnalyzeImage (class in nibabel.analyze) angle_axis2euler() (in module nibabel.eulerangles) angle_axis2mat() (in module nibabel.quaternions) angle_axis2quat() (in module nibabel.quaternions) ap() (in module nibabel.cmdline.utils) append() (nibabel.cifti2.cifti2.Cifti2LabelTable method) (nibabel.streamlines.array_sequence.ArraySequence method) append_cifti_vertices() (nibabel.cifti2.cifti2.Cifti2Parcel method) append_diag() (in module nibabel.affines) applies() (nibabel.nicom.dicomwrappers.FilterDwiIso method) (nibabel.nicom.dicomwrappers.FilterMultiStack method) (nibabel.nicom.dicomwrappers.FrameFilter method) apply_affine() (in module nibabel.affines) (nibabel.streamlines.tractogram.LazyTractogram method) (nibabel.streamlines.tractogram.Tractogram method) apply_orientation() (in module nibabel.orientations) apply_read_scaling() (in module nibabel.volumeutils) are_values_different() (in module nibabel.cmdline.diff) array (nibabel.arraywriters.ArrayWriter property) array_from_file() (in module nibabel.volumeutils) array_to_file() (in module nibabel.volumeutils) ArrayLike (class in nibabel.arrayproxy) ArrayProxy (class in nibabel.arrayproxy) ArraySequence (class in nibabel.streamlines.array_sequence) ArrayWriter (class in nibabel.arraywriters) as_analyze_map() (nibabel.analyze.AnalyzeHeader method) (nibabel.parrec.PARRECHeader method) as_byteswapped() (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.wrapstruct.WrapStruct method) as_closest_canonical() (in module nibabel.funcs) as_int() (in module nibabel.casting) as_reoriented() (nibabel.nifti1.Nifti1Pair method) (nibabel.spatialimages.SpatialImage method) AscconvParseError (class in nibabel.nicom.ascconv) assign2atoms() (in module nibabel.nicom.ascconv) Atom (class in nibabel.nicom.ascconv) axcodes2ornt() (in module nibabel.orientations) Axis (class in nibabel.cifti2.cifti2_axes) B B2q() (in module nibabel.nicom.dwiparams) b_matrix (nibabel.nicom.dicomwrappers.SiemensWrapper property) (nibabel.nicom.dicomwrappers.Wrapper attribute) b_value (nibabel.nicom.dicomwrappers.Wrapper property) b_vector (nibabel.nicom.dicomwrappers.Wrapper property) BatteryRunner (class in nibabel.batteryrunners) bench() (in module nibabel) bench_array_to_file() (in module nibabel.benchmarks.bench_array_to_file) bench_arrayproxy_slicing() (in module nibabel.benchmarks.bench_arrayproxy_slicing) bench_fileslice() (in module nibabel.benchmarks.bench_fileslice) bench_finite_range() (in module nibabel.benchmarks.bench_finite_range) bench_load_save() (in module nibabel.benchmarks.bench_load_save) best_float() (in module nibabel.casting) best_write_scale_ftype() (in module nibabel.volumeutils) better_float_of() (in module nibabel.volumeutils) binaryblock (nibabel.wrapstruct.WrapStruct property) Bomber (class in nibabel.data) BomberError (class in nibabel.data) brain_models (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap property) BrainModelAxis (class in nibabel.cifti2.cifti2_axes) bz2_def (nibabel.openers.Opener attribute) C CachingError (class in nibabel.dft) calc_scale() (nibabel.arraywriters.SlopeArrayWriter method) calc_slicedefs() (in module nibabel.fileslice) calculate_dwell_time() (in module nibabel.mriutils) canonical_slicers() (in module nibabel.fileslice) CaretMetaData (class in nibabel.caret) CastingError (class in nibabel.casting) ceil_exact() (in module nibabel.casting) CharacterDataHandler() (nibabel.cifti2.parse_cifti2.Cifti2Parser method) (nibabel.gifti.parse_gifti_fast.GiftiImageParser method) (nibabel.xmlutils.XmlParser method) check_fix() (nibabel.batteryrunners.BatteryRunner method) (nibabel.wrapstruct.WrapStruct method) check_only() (nibabel.batteryrunners.BatteryRunner method) check_slicing() (nibabel.spatialimages.SpatialFirstSlicer method) chk_version() (nibabel.freesurfer.mghformat.MGHHeader static method) Cifti2BrainModel (class in nibabel.cifti2.cifti2) Cifti2Extension (class in nibabel.cifti2.parse_cifti2) Cifti2Header (class in nibabel.cifti2.cifti2) Cifti2HeaderError (class in nibabel.cifti2.cifti2) Cifti2Image (class in nibabel.cifti2.cifti2) Cifti2Label (class in nibabel.cifti2.cifti2) Cifti2LabelTable (class in nibabel.cifti2.cifti2) Cifti2Matrix (class in nibabel.cifti2.cifti2) Cifti2MatrixIndicesMap (class in nibabel.cifti2.cifti2) Cifti2MetaData (class in nibabel.cifti2.cifti2) Cifti2NamedMap (class in nibabel.cifti2.cifti2) Cifti2Parcel (class in nibabel.cifti2.cifti2) Cifti2Parser (class in nibabel.cifti2.parse_cifti2) Cifti2Surface (class in nibabel.cifti2.cifti2) Cifti2TransformationMatrixVoxelIndicesIJKtoXYZ (class in nibabel.cifti2.cifti2) Cifti2VertexIndices (class in nibabel.cifti2.cifti2) Cifti2Vertices (class in nibabel.cifti2.cifti2) Cifti2Volume (class in nibabel.cifti2.cifti2) Cifti2VoxelIndicesIJK (class in nibabel.cifti2.cifti2) clear_cache() (in module nibabel.dft) clim (nibabel.viewers.OrthoSlicer3D property) close() (nibabel.openers.Opener method) (nibabel.viewers.OrthoSlicer3D method) close_if_mine() (nibabel.openers.Opener method) closed (nibabel.openers.Opener property) cmap (nibabel.viewers.OrthoSlicer3D property) code (nibabel.cifti2.parse_cifti2.Cifti2Extension attribute) (nibabel.nifti1.Nifti1DicomExtension attribute) (nibabel.nifti1.Nifti1Extension attribute) (nibabel.nifti1.NiftiExtension attribute) common_shape (nibabel.streamlines.array_sequence.ArraySequence property) compress_ext_icase (nibabel.openers.Opener attribute) compress_ext_map (nibabel.openers.ImageOpener attribute) (nibabel.openers.Opener attribute) concat_images() (in module nibabel.funcs) concatenate() (in module nibabel.streamlines.array_sequence) conform() (in module nibabel.processing) conjugate() (in module nibabel.quaternions) content (nibabel.nifti1.NiftiExtension property) CoordinateArray (class in nibabel.pointset) coordinates (nibabel.pointset.Pointset attribute) copy() (nibabel.arrayproxy.ArrayProxy method) (nibabel.brikhead.AFNIHeader method) (nibabel.filebasedimages.FileBasedHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.nifti1.Nifti1Header method) (nibabel.parrec.PARRECHeader method) (nibabel.spatialimages.SpatialHeader method) (nibabel.streamlines.array_sequence.ArraySequence method) (nibabel.streamlines.tractogram.LazyTractogram method) (nibabel.streamlines.tractogram.Tractogram method) (nibabel.wrapstruct.WrapStruct method) copy_file_map() (in module nibabel.fileholders) count() (nibabel.nifti1.Nifti1Extensions method) count_nonzero_voxels() (in module nibabel.imagestats) create_arraysequences_from_generator() (in module nibabel.streamlines.array_sequence) create_empty_header() (nibabel.streamlines.tck.TckFile class method) (nibabel.streamlines.tractogram_file.TractogramFile class method) (nibabel.streamlines.trk.TrkFile class method) CSAError (class in nibabel.nicom.csareader) CSAReadError (class in nibabel.nicom.csareader) D data (nibabel.cifti2.cifti2.Cifti2MetaData property) (nibabel.gifti.gifti.GiftiMetaData property) (nibabel.streamlines.tractogram.LazyTractogram property) data_from_fileobj() (nibabel.analyze.AnalyzeHeader method) (nibabel.ecat.EcatSubHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.minc1.MincHeader method) (nibabel.spatialimages.SpatialHeader method) data_layout (nibabel.minc1.MincHeader attribute) (nibabel.spatialimages.SpatialHeader attribute) data_per_point (nibabel.streamlines.tractogram.LazyTractogram property) (nibabel.streamlines.tractogram.Tractogram property) data_per_streamline (nibabel.streamlines.tractogram.LazyTractogram property) (nibabel.streamlines.tractogram.Tractogram property) data_to_fileobj() (nibabel.analyze.AnalyzeHeader method) (nibabel.minc1.MincHeader method) (nibabel.spatialimages.SpatialHeader method) DataError (class in nibabel.data) (class in nibabel.streamlines.tractogram_file) dataobj (nibabel.dataobj_images.DataobjImage property) DataobjImage (class in nibabel.dataobj_images) Datasource (class in nibabel.data) datasource_or_bomber() (in module nibabel.data) DataWarning (class in nibabel.streamlines.tractogram_file) decode_value_from_name() (in module nibabel.streamlines.trk) default_compresslevel (nibabel.openers.Opener attribute) default_structarr() (nibabel.analyze.AnalyzeHeader class method) (nibabel.ecat.EcatHeader class method) (nibabel.freesurfer.mghformat.MGHHeader class method) (nibabel.nifti1.Nifti1Header class method) (nibabel.nifti2.Nifti2Header class method) (nibabel.spm99analyze.SpmAnalyzeHeader class method) (nibabel.wrapstruct.WrapStruct class method) default_x_flip (nibabel.analyze.AnalyzeHeader attribute) (nibabel.spatialimages.SpatialHeader attribute) default_zst_level (nibabel.openers.Opener attribute) Deprecator (class in nibabel.deprecator) detect_format() (in module nibabel.streamlines) DeterministicGzipFile (class in nibabel._compression) DFTError (class in nibabel.dft) diagnose_binaryblock() (nibabel.freesurfer.mghformat.MGHHeader class method) (nibabel.wrapstruct.WrapStruct class method) dicom_test() (in module nibabel.pydicom_compat) DICOMFS (class in nibabel.cmdline.dicomfs) DicomReadError (class in nibabel.nicom.dicomreaders) diff() (in module nibabel.cmdline.diff) difference_update() (nibabel.cifti2.cifti2.Cifti2MetaData method) dim (nibabel.pointset.Pointset property) DIMENSIONS (nibabel.streamlines.header.Field attribute) display_diff() (in module nibabel.cmdline.diff) dot_reduce() (in module nibabel.affines) draw() (nibabel.viewers.OrthoSlicer3D method) dtype (nibabel.arrayproxy.ArrayProxy property) (nibabel.parrec.PARRECArrayProxy property) (nibabel.pointset.GridIndices attribute) DtypeMapper (class in nibabel.volumeutils) dummy_fuse (class in nibabel.cmdline.dicomfs) E EcatHeader (class in nibabel.ecat) EcatImage (class in nibabel.ecat) EcatImageArrayProxy (class in nibabel.ecat) EcatSubHeader (class in nibabel.ecat) encode_value_in_name() (in module nibabel.streamlines.trk) encoding (nibabel.nifti1.NiftiExtension attribute) EndElementHandler() (nibabel.cifti2.parse_cifti2.Cifti2Parser method) (nibabel.gifti.parse_gifti_fast.GiftiImageParser method) (nibabel.xmlutils.XmlParser method) ENDIANNESS (nibabel.streamlines.header.Field attribute) endianness (nibabel.wrapstruct.WrapStruct property) EOF_DELIMITER (nibabel.streamlines.tck.TckFile attribute) error() (in module nibabel.cmdline.parrec2nii) ErrorLevel (class in nibabel.imageglobals) euler2angle_axis() (in module nibabel.eulerangles) euler2mat() (in module nibabel.eulerangles) euler2quat() (in module nibabel.eulerangles) ExpiredDeprecationError (class in nibabel.deprecator) extend() (nibabel.streamlines.array_sequence.ArraySequence method) (nibabel.streamlines.tractogram.LazyTractogram method) (nibabel.streamlines.tractogram.PerArrayDict method) (nibabel.streamlines.tractogram.Tractogram method) ExtensionWarning (class in nibabel.streamlines.tractogram_file) exts2pars() (in module nibabel.parrec) exts_klass (nibabel.nifti1.Nifti1Header attribute) eye() (in module nibabel.quaternions) F FIBER_DELIMITER (nibabel.streamlines.tck.TckFile attribute) Field (class in nibabel.streamlines.header) fields (nibabel.volumeutils.Recoder attribute) figs (nibabel.viewers.OrthoSlicer3D property) file_like (nibabel.fileholders.FileHolder property) FileBasedHeader (class in nibabel.filebasedimages) FileBasedImage (class in nibabel.filebasedimages) FileHandle (class in nibabel.cmdline.dicomfs) FileHolder (class in nibabel.fileholders) FileHolderError (class in nibabel.fileholders) Fileish (class in nibabel.openers) fileno() (nibabel.openers.Opener method) files_types (nibabel.analyze.AnalyzeImage attribute) (nibabel.brikhead.AFNIImage attribute) (nibabel.cifti2.cifti2.Cifti2Image attribute) (nibabel.ecat.EcatImage attribute) (nibabel.filebasedimages.FileBasedImage attribute) (nibabel.freesurfer.mghformat.MGHImage attribute) (nibabel.gifti.gifti.GiftiImage attribute) (nibabel.minc1.Minc1Image attribute) (nibabel.nifti1.Nifti1Image attribute) (nibabel.parrec.PARRECImage attribute) (nibabel.spm99analyze.Spm99AnalyzeImage attribute) fileslice() (in module nibabel.fileslice) filespec_to_file_map() (nibabel.brikhead.AFNIImage class method) (nibabel.filebasedimages.FileBasedImage class method) (nibabel.freesurfer.mghformat.MGHImage class method) fill_slicer() (in module nibabel.fileslice) fillpositive() (in module nibabel.quaternions) FilterDwiIso (class in nibabel.nicom.dicomwrappers) FilterMultiStack (class in nibabel.nicom.dicomwrappers) finalize_append() (nibabel.streamlines.array_sequence.ArraySequence method) find_data_dir() (in module nibabel.data) find_private_section() (in module nibabel.nicom.utils) finite_range() (in module nibabel.volumeutils) (nibabel.arraywriters.ArrayWriter method) flip_axis() (in module nibabel.orientations) float_to_int() (in module nibabel.casting) FloatingError (class in nibabel.casting) floor_exact() (in module nibabel.casting) floor_log2() (in module nibabel.casting) flush_chardata() (nibabel.cifti2.parse_cifti2.Cifti2Parser method) (nibabel.gifti.parse_gifti_fast.GiftiImageParser method) fname_ext_ul_case() (in module nibabel.volumeutils) fobj (nibabel.openers.Opener attribute) four_to_three() (in module nibabel.funcs) frame_order (nibabel.nicom.dicomwrappers.MultiframeWrapper property) FrameFilter (class in nibabel.nicom.dicomwrappers) from_axes() (nibabel.cifti2.cifti2.Cifti2Header class method) from_brain_models() (nibabel.cifti2.cifti2_axes.ParcelsAxis class method) from_bytes() (nibabel.filebasedimages.SerializableImage class method) (nibabel.nifti1.NiftiExtension class method) from_data_func() (nibabel.streamlines.tractogram.LazyTractogram class method) from_dict() (nibabel.gifti.gifti.GiftiMetaData class method) from_file_map() (nibabel.analyze.AnalyzeImage class method) (nibabel.brikhead.AFNIImage class method) (nibabel.cifti2.cifti2.Cifti2Image class method) (nibabel.dataobj_images.DataobjImage class method) (nibabel.ecat.EcatImage class method) (nibabel.filebasedimages.FileBasedImage class method) (nibabel.freesurfer.mghformat.MGHImage class method) (nibabel.gifti.gifti.GiftiImage class method) (nibabel.minc1.Minc1Image class method) (nibabel.minc2.Minc2Image class method) (nibabel.parrec.PARRECImage class method) (nibabel.spm99analyze.Spm99AnalyzeImage class method) from_filename() (nibabel.dataobj_images.DataobjImage class method) (nibabel.filebasedimages.FileBasedImage class method) (nibabel.gifti.gifti.GiftiImage class method) (nibabel.parrec.PARRECImage class method) from_fileobj() (nibabel.brikhead.AFNIHeader class method) (nibabel.filebasedimages.FileBasedHeader class method) (nibabel.freesurfer.mghformat.MGHHeader class method) (nibabel.nifti1.Nifti1Extensions class method) (nibabel.nifti1.Nifti1Header class method) (nibabel.parrec.PARRECHeader class method) (nibabel.wrapstruct.WrapStruct class method) from_header() (nibabel.analyze.AnalyzeHeader class method) (nibabel.brikhead.AFNIHeader class method) (nibabel.filebasedimages.FileBasedHeader class method) (nibabel.freesurfer.mghformat.MGHHeader class method) (nibabel.nifti1.Nifti1Header class method) (nibabel.parrec.PARRECHeader class method) (nibabel.spatialimages.SpatialHeader class method) from_image() (nibabel.cifti2.cifti2.Cifti2Image class method) (nibabel.ecat.EcatImage class method) (nibabel.filebasedimages.FileBasedImage class method) (nibabel.pointset.Grid class method) (nibabel.spatialimages.SpatialImage class method) from_index_mapping() (in module nibabel.cifti2.cifti2_axes) (nibabel.cifti2.cifti2_axes.BrainModelAxis class method) (nibabel.cifti2.cifti2_axes.LabelAxis class method) (nibabel.cifti2.cifti2_axes.ParcelsAxis class method) (nibabel.cifti2.cifti2_axes.ScalarAxis class method) (nibabel.cifti2.cifti2_axes.SeriesAxis class method) from_mask() (nibabel.cifti2.cifti2_axes.BrainModelAxis class method) (nibabel.pointset.Grid class method) from_matvec() (in module nibabel.affines) from_object() (nibabel.nifti1.NiftiExtension class method) from_stream() (nibabel.filebasedimages.SerializableImage class method) from_surface() (nibabel.cifti2.cifti2_axes.BrainModelAxis class method) from_tractogram() (nibabel.streamlines.tractogram.LazyTractogram class method) from_url() (nibabel.filebasedimages.SerializableImage class method) fuse (in module nibabel.cmdline.dicomfs) Fuse (nibabel.cmdline.dicomfs.dummy_fuse attribute) fuse_python_api (nibabel.cmdline.dicomfs.dummy_fuse attribute) FutureWarningMixin (class in nibabel.deprecated) fwhm2sigma() (in module nibabel.processing) G GE (nibabel.nicom.utils.Vendor attribute) get() (nibabel.nicom.dicomwrappers.Wrapper method) (nibabel.wrapstruct.WrapStruct method) get_acq_mat_txt() (in module nibabel.nicom.csareader) get_affine() (nibabel.brikhead.AFNIHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.minc1.Minc1File method) (nibabel.parrec.PARRECHeader method) get_affine_from_reference() (in module nibabel.streamlines.utils) get_affine_rasmm_to_trackvis() (in module nibabel.streamlines.trk) get_affine_trackvis_to_rasmm() (in module nibabel.streamlines.trk) get_arrays_from_intent() (nibabel.gifti.gifti.GiftiImage method) get_axis() (nibabel.cifti2.cifti2.Cifti2Header method) (nibabel.cifti2.cifti2.Cifti2Matrix method) get_b_matrix() (in module nibabel.nicom.csareader) get_b_value() (in module nibabel.nicom.csareader) get_base_affine() (nibabel.analyze.AnalyzeHeader method) (nibabel.spatialimages.SpatialHeader method) get_best_affine() (nibabel.analyze.AnalyzeHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.nifti1.Nifti1Header method) (nibabel.spatialimages.SpatialHeader method) (nibabel.spm99analyze.Spm99AnalyzeHeader method) get_bvals_bvecs() (nibabel.parrec.PARRECHeader method) get_code() (nibabel.nifti1.NiftiExtension method) get_codes() (nibabel.nifti1.Nifti1Extensions method) get_content() (nibabel.nifti1.NiftiExtension method) get_coords() (nibabel.pointset.Pointset method) get_csa_header() (in module nibabel.nicom.csareader) get_data() (nibabel.dataobj_images.DataobjImage method) (nibabel.nicom.dicomwrappers.Wrapper method) (nibabel.streamlines.array_sequence.ArraySequence method) get_data_bytespervox() (nibabel.freesurfer.mghformat.MGHHeader method) get_data_diff() (in module nibabel.cmdline.diff) get_data_dtype() (nibabel.analyze.AnalyzeHeader method) (nibabel.analyze.AnalyzeImage method) (nibabel.cifti2.cifti2.Cifti2Image method) (nibabel.ecat.EcatHeader method) (nibabel.ecat.EcatImage method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.minc1.Minc1File method) (nibabel.minc2.Minc2File method) (nibabel.nifti1.Nifti1Pair method) (nibabel.spatialimages.HasDtype method) (nibabel.spatialimages.SpatialHeader method) (nibabel.spatialimages.SpatialImage method) (nibabel.spatialimages.SpatialProtocol method) get_data_hash_diff() (in module nibabel.cmdline.diff) get_data_offset() (nibabel.analyze.AnalyzeHeader method) (nibabel.brikhead.AFNIHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.parrec.PARRECHeader method) get_data_path() (in module nibabel.data) get_data_scaling() (nibabel.brikhead.AFNIHeader method) (nibabel.parrec.PARRECHeader method) get_data_shape() (nibabel.analyze.AnalyzeHeader method) (nibabel.cifti2.cifti2.Cifti2Matrix method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.minc1.Minc1File method) (nibabel.minc2.Minc2File method) (nibabel.nifti1.Nifti1Header method) (nibabel.nifti2.Nifti2Header method) (nibabel.spatialimages.SpatialHeader method) (nibabel.spatialimages.SpatialProtocol method) get_data_size() (nibabel.freesurfer.mghformat.MGHHeader method) get_def() (nibabel.parrec.PARRECHeader method) get_dim_info() (nibabel.nifti1.Nifti1Header method) get_echo_train_length() (nibabel.parrec.PARRECHeader method) get_element() (nibabel.cifti2.cifti2_axes.BrainModelAxis method) (nibabel.cifti2.cifti2_axes.LabelAxis method) (nibabel.cifti2.cifti2_axes.ParcelsAxis method) (nibabel.cifti2.cifti2_axes.ScalarAxis method) (nibabel.cifti2.cifti2_axes.SeriesAxis method) get_fdata() (nibabel.dataobj_images.DataobjImage method) get_filename() (nibabel.data.Datasource method) (nibabel.filebasedimages.FileBasedImage method) get_filetype() (nibabel.ecat.EcatHeader method) get_footer_offset() (nibabel.freesurfer.mghformat.MGHHeader method) get_frame() (nibabel.ecat.EcatImage method) get_frame_affine() (nibabel.ecat.EcatImage method) (nibabel.ecat.EcatSubHeader method) get_frame_order() (in module nibabel.ecat) get_g_vector() (in module nibabel.nicom.csareader) get_headers_diff() (in module nibabel.cmdline.diff) get_home_dir() (in module nibabel.environment) get_ice_dims() (in module nibabel.nicom.csareader) get_index_map() (nibabel.cifti2.cifti2.Cifti2Header method) (nibabel.cifti2.cifti2.Cifti2Matrix method) get_info() (in module nibabel) get_intent() (nibabel.nifti1.Nifti1Header method) get_labels_as_dict() (nibabel.gifti.gifti.GiftiLabelTable method) get_mlist() (nibabel.ecat.EcatImage method) get_n_mosaic() (in module nibabel.nicom.csareader) get_n_slices() (nibabel.nifti1.Nifti1Header method) get_nframes() (nibabel.ecat.EcatSubHeader method) get_nipy_system_dir() (in module nibabel.environment) get_nipy_user_dir() (in module nibabel.environment) get_obj_dtype() (in module nibabel.arrayproxy) get_object() (nibabel.nifti1.NiftiExtension method) get_opt_parser() (in module nibabel.cmdline.dicomfs) (in module nibabel.cmdline.diff) (in module nibabel.cmdline.ls) (in module nibabel.cmdline.parrec2nii) get_origin_affine() (nibabel.spm99analyze.Spm99AnalyzeHeader method) get_paths() (nibabel.cmdline.dicomfs.DICOMFS method) get_patient_orient() (nibabel.ecat.EcatHeader method) get_pixel_array() (nibabel.nicom.dicomwrappers.Wrapper method) get_prepare_fileobj() (nibabel.fileholders.FileHolder method) get_q_vectors() (nibabel.parrec.PARRECHeader method) get_qform() (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.Nifti1Pair method) get_qform_quaternion() (nibabel.nifti1.Nifti1Header method) get_ras2vox() (nibabel.freesurfer.mghformat.MGHHeader method) get_rec_shape() (nibabel.parrec.PARRECHeader method) get_scalar() (in module nibabel.nicom.csareader) get_scaled_data() (nibabel.minc1.Minc1File method) (nibabel.minc2.Minc2File method) get_series_framenumbers() (in module nibabel.ecat) get_sform() (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.Nifti1Pair method) get_shape() (nibabel.ecat.EcatSubHeader method) get_sizeondisk() (nibabel.nifti1.Nifti1Extensions method) (nibabel.nifti1.NiftiExtension method) get_slice_duration() (nibabel.nifti1.Nifti1Header method) get_slice_normal() (in module nibabel.nicom.csareader) get_slice_orientation() (nibabel.parrec.PARRECHeader method) get_slice_times() (nibabel.nifti1.Nifti1Header method) get_slope_inter() (in module nibabel.arraywriters) (nibabel.analyze.AnalyzeHeader method) (nibabel.brikhead.AFNIHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.nifti1.Nifti1Header method) (nibabel.spm2analyze.Spm2AnalyzeHeader method) (nibabel.spm99analyze.SpmAnalyzeHeader method) get_sorted_slice_indices() (nibabel.parrec.PARRECHeader method) get_space() (nibabel.brikhead.AFNIHeader method) get_studies() (in module nibabel.dft) get_subheaders() (nibabel.ecat.EcatImage method) get_unscaled() (nibabel.arrayproxy.ArrayProxy method) (nibabel.parrec.PARRECArrayProxy method) get_unscaled_data() (nibabel.nicom.dicomwrappers.MosaicWrapper method) (nibabel.nicom.dicomwrappers.MultiframeWrapper method) (nibabel.nicom.dicomwrappers.Wrapper method) get_value_label() (nibabel.wrapstruct.LabeledWrapStruct method) get_vector() (in module nibabel.nicom.csareader) get_volume_labels() (nibabel.brikhead.AFNIHeader method) (nibabel.parrec.PARRECHeader method) get_vox2ras() (nibabel.freesurfer.mghformat.MGHHeader method) get_vox2ras_tkr() (nibabel.freesurfer.mghformat.MGHHeader method) get_water_fat_shift() (nibabel.parrec.PARRECHeader method) get_xyzt_units() (nibabel.nifti1.Nifti1Header method) get_zooms() (nibabel.analyze.AnalyzeHeader method) (nibabel.ecat.EcatSubHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.minc1.Minc1File method) (nibabel.spatialimages.SpatialHeader method) (nibabel.spatialimages.SpatialProtocol method) getattr() (nibabel.cmdline.dicomfs.DICOMFS method) GiftiCoordSystem (class in nibabel.gifti.gifti) GiftiDataArray (class in nibabel.gifti.gifti) GiftiImage (class in nibabel.gifti.gifti) GiftiImageParser (class in nibabel.gifti.parse_gifti_fast) GiftiLabel (class in nibabel.gifti.gifti) GiftiLabelTable (class in nibabel.gifti.gifti) GiftiMetaData (class in nibabel.gifti.gifti) GiftiNVPairs (class in nibabel.gifti.gifti) GiftiParseError (class in nibabel.gifti.parse_gifti_fast) Grid (class in nibabel.pointset) GridIndices (class in nibabel.pointset) gridshape (nibabel.pointset.GridIndices attribute) guessed_endian() (nibabel.analyze.AnalyzeHeader class method) (nibabel.ecat.EcatHeader class method) (nibabel.freesurfer.mghformat.MGHHeader class method) (nibabel.wrapstruct.WrapStruct class method) guessed_image_type() (in module nibabel.loadsave) gz_def (nibabel.openers.Opener attribute) gzip_open() (in module nibabel._compression) H HANDLER_NAMES (nibabel.xmlutils.XmlParser attribute) has_affine (nibabel.spm99analyze.Spm99AnalyzeImage attribute) has_data_intercept (nibabel.analyze.AnalyzeHeader attribute) (nibabel.nifti1.Nifti1Header attribute) (nibabel.spm99analyze.SpmAnalyzeHeader attribute) has_data_slope (nibabel.analyze.AnalyzeHeader attribute) (nibabel.nifti1.Nifti1Header attribute) (nibabel.spm99analyze.SpmAnalyzeHeader attribute) has_nan (nibabel.arraywriters.ArrayWriter property) HasDtype (class in nibabel.spatialimages) have_binary128() (in module nibabel.casting) Hdf5Bunch (class in nibabel.minc2) header (nibabel.filebasedimages.FileBasedImage property) (nibabel.streamlines.tractogram_file.TractogramFile property) header_class (nibabel.analyze.AnalyzeImage attribute) (nibabel.brikhead.AFNIImage attribute) (nibabel.cifti2.cifti2.Cifti2Image attribute) (nibabel.ecat.EcatImage attribute) (nibabel.filebasedimages.FileBasedImage attribute) (nibabel.freesurfer.mghformat.MGHImage attribute) (nibabel.minc1.Minc1Image attribute) (nibabel.minc2.Minc2Image attribute) (nibabel.nifti1.Nifti1Image attribute) (nibabel.nifti1.Nifti1Pair attribute) (nibabel.nifti2.Nifti2Image attribute) (nibabel.nifti2.Nifti2Pair attribute) (nibabel.parrec.PARRECImage attribute) (nibabel.spatialimages.SpatialImage attribute) (nibabel.spm2analyze.Spm2AnalyzeImage attribute) (nibabel.spm99analyze.Spm99AnalyzeImage attribute) HEADER_SIZE (nibabel.streamlines.trk.TrkFile attribute) HeaderDataError (class in nibabel.spatialimages) HeaderError (class in nibabel.streamlines.tractogram_file) HeaderTypeError (class in nibabel.spatialimages) HeaderWarning (class in nibabel.streamlines.tractogram_file) homogeneous (nibabel.pointset.Pointset attribute) I image_orient_patient (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) image_position (nibabel.nicom.dicomwrappers.MosaicWrapper property) (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) image_shape (nibabel.nicom.dicomwrappers.MosaicWrapper property) (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) ImageArrayProxy (nibabel.analyze.AnalyzeImage attribute) (nibabel.brikhead.AFNIImage attribute) (nibabel.ecat.EcatImage attribute) (nibabel.freesurfer.mghformat.MGHImage attribute) (nibabel.minc1.Minc1Image attribute) (nibabel.parrec.PARRECImage attribute) ImageDataError (class in nibabel.spatialimages) ImageFileError (class in nibabel.filebasedimages) ImageOpener (class in nibabel.openers) ImageSlicer (nibabel.spatialimages.SpatialImage attribute) img (nibabel.spatialimages.SpatialFirstSlicer attribute) in_memory (nibabel.dataobj_images.DataobjImage property) InGivenDirectory() (in module nibabel.tmpdirs) insert() (nibabel.cifti2.cifti2.Cifti2Matrix method) (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap method) (nibabel.cifti2.cifti2.Cifti2VertexIndices method) (nibabel.cifti2.cifti2.Cifti2Vertices method) (nibabel.cifti2.cifti2.Cifti2VoxelIndicesIJK method) instance_number (nibabel.nicom.dicomwrappers.Wrapper property) instance_to_filename() (nibabel.filebasedimages.FileBasedImage class method) InstanceStackError (class in nibabel.dft) int_abs() (in module nibabel.casting) int_scinter_ftype() (in module nibabel.volumeutils) int_to_float() (in module nibabel.casting) InTemporaryDirectory() (in module nibabel.tmpdirs) inter (nibabel.arrayproxy.ArrayProxy property) (nibabel.arraywriters.SlopeInterArrayWriter property) inv_ornt_aff() (in module nibabel.orientations) inverse() (in module nibabel.quaternions) io_orientation() (in module nibabel.orientations) is_array_sequence (nibabel.streamlines.array_sequence.ArraySequence property) is_array_sequence() (in module nibabel.streamlines.array_sequence) is_bad_version() (nibabel.deprecator.Deprecator method) is_correct_format() (nibabel.streamlines.tck.TckFile class method) (nibabel.streamlines.tractogram_file.TractogramFile class method) (nibabel.streamlines.trk.TrkFile class method) is_csa (nibabel.nicom.dicomwrappers.SiemensWrapper attribute) (nibabel.nicom.dicomwrappers.Wrapper attribute) is_data_dict() (in module nibabel.streamlines.tractogram) is_fancy() (in module nibabel.fileslice) is_lazy_dict() (in module nibabel.streamlines.tractogram) is_mosaic (nibabel.nicom.dicomwrappers.MosaicWrapper attribute) (nibabel.nicom.dicomwrappers.Wrapper attribute) is_mosaic() (in module nibabel.nicom.csareader) is_multiframe (nibabel.nicom.dicomwrappers.MultiframeWrapper attribute) (nibabel.nicom.dicomwrappers.Wrapper attribute) is_ndarray_of_int_or_bool() (in module nibabel.streamlines.array_sequence) is_proxy (nibabel.arrayproxy.ArrayProxy property) (nibabel.ecat.EcatImageArrayProxy property) (nibabel.minc1.MincImageArrayProxy property) (nibabel.parrec.PARRECArrayProxy property) is_proxy() (in module nibabel.arrayproxy) is_same_series() (nibabel.nicom.dicomwrappers.Wrapper method) is_single (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti1.Nifti1PairHeader attribute) (nibabel.nifti2.Nifti2PairHeader attribute) is_sliced_view (nibabel.streamlines.array_sequence.ArraySequence property) is_supported() (in module nibabel.streamlines) is_tripwire() (in module nibabel.tripwire) isunit() (in module nibabel.quaternions) items() (nibabel.wrapstruct.WrapStruct method) iter_structures() (nibabel.cifti2.cifti2_axes.BrainModelAxis method) J json() (nibabel.nifti1.NiftiExtension method) K keep() (nibabel.nicom.dicomwrappers.FilterDwiIso method) (nibabel.nicom.dicomwrappers.FilterMultiStack method) (nibabel.nicom.dicomwrappers.FrameFilter method) keys() (nibabel.volumeutils.Recoder method) (nibabel.wrapstruct.WrapStruct method) L label_table (nibabel.cifti2.cifti2.Cifti2NamedMap property) LabelAxis (class in nibabel.cifti2.cifti2_axes) LabeledWrapStruct (class in nibabel.wrapstruct) labeltable (nibabel.gifti.gifti.GiftiImage property) LazyDict (class in nibabel.streamlines.tractogram) LazyTractogram (class in nibabel.streamlines.tractogram) LimitedNifti2Header (class in nibabel.cifti2.cifti2) link_to() (nibabel.viewers.OrthoSlicer3D method) list_files() (nibabel.data.Datasource method) load() (in module nibabel.loadsave) (in module nibabel.nifti1) (in module nibabel.nifti2) (in module nibabel.streamlines) (nibabel.dataobj_images.DataobjImage class method) (nibabel.ecat.EcatImage class method) (nibabel.filebasedimages.FileBasedImage class method) (nibabel.parrec.PARRECImage class method) (nibabel.streamlines.array_sequence.ArraySequence class method) (nibabel.streamlines.tck.TckFile class method) (nibabel.streamlines.tractogram_file.TractogramFile class method) (nibabel.streamlines.trk.TrkFile class method) log_raise() (nibabel.batteryrunners.Report method) LoggingOutputSuppressor (class in nibabel.imageglobals) longdouble_lte_float64() (in module nibabel.casting) longdouble_precision_improved() (in module nibabel.casting) lossless_slice() (in module nibabel.cmdline.roi) M MAGIC_NUMBER (nibabel.streamlines.header.Field attribute) (nibabel.streamlines.tck.TckFile attribute) (nibabel.streamlines.trk.TrkFile attribute) main() (in module nibabel.cmdline.conform) (in module nibabel.cmdline.convert) (in module nibabel.cmdline.dicomfs) (in module nibabel.cmdline.diff) (in module nibabel.cmdline.ls) (in module nibabel.cmdline.nifti_dx) (in module nibabel.cmdline.parrec2nii) (in module nibabel.cmdline.roi) (in module nibabel.cmdline.stats) (in module nibabel.cmdline.tck2trk) (in module nibabel.cmdline.trk2tck) make_array_writer() (in module nibabel.arraywriters) make_datasource() (in module nibabel.data) make_dt_codes() (in module nibabel.volumeutils) make_file_map() (nibabel.filebasedimages.FileBasedImage class method) makeable (nibabel.analyze.AnalyzeImage attribute) (nibabel.brikhead.AFNIImage attribute) (nibabel.cifti2.cifti2.Cifti2Image attribute) (nibabel.filebasedimages.FileBasedImage attribute) (nibabel.freesurfer.mghformat.MGHImage attribute) (nibabel.minc1.Minc1Image attribute) (nibabel.parrec.PARRECImage attribute) (nibabel.spm99analyze.Spm99AnalyzeImage attribute) mapped_indices (nibabel.cifti2.cifti2.Cifti2Header property) (nibabel.cifti2.cifti2.Cifti2Matrix property) mask_volume() (in module nibabel.imagestats) mat2euler() (in module nibabel.eulerangles) mat2quat() (in module nibabel.quaternions) match_path() (nibabel.cmdline.dicomfs.DICOMFS method) may_contain_header() (nibabel.analyze.AnalyzeHeader class method) (nibabel.cifti2.cifti2.Cifti2Header class method) (nibabel.minc1.Minc1Header class method) (nibabel.minc2.Minc2Header class method) (nibabel.nifti1.Nifti1Header class method) (nibabel.nifti2.Nifti2Header class method) (nibabel.spm2analyze.Spm2AnalyzeHeader class method) message (nibabel.batteryrunners.Report property) meta (nibabel.gifti.gifti.GiftiImage property) metadata (nibabel.cifti2.cifti2.Cifti2Matrix property) (nibabel.cifti2.cifti2.Cifti2NamedMap property) (nibabel.gifti.gifti.GiftiDataArray property) (nibabel.gifti.gifti.GiftiMetaData property) METHOD (nibabel.streamlines.header.Field attribute) MGHError (class in nibabel.freesurfer.mghformat) MGHHeader (class in nibabel.freesurfer.mghformat) MGHImage (class in nibabel.freesurfer.mghformat) Minc1File (class in nibabel.minc1) Minc1Header (class in nibabel.minc1) Minc1Image (class in nibabel.minc1) Minc2File (class in nibabel.minc2) Minc2Header (class in nibabel.minc2) Minc2Image (class in nibabel.minc2) MincError (class in nibabel.minc1) MincHeader (class in nibabel.minc1) MincImageArrayProxy (class in nibabel.minc1) mode (nibabel.openers.Opener property) module nibabel nibabel._compression nibabel._typing nibabel.affines nibabel.analyze nibabel.arrayproxy nibabel.arraywriters nibabel.batteryrunners nibabel.benchmarks nibabel.benchmarks.bench_array_to_file nibabel.benchmarks.bench_arrayproxy_slicing nibabel.benchmarks.bench_fileslice nibabel.benchmarks.bench_finite_range nibabel.benchmarks.bench_load_save nibabel.benchmarks.butils nibabel.brikhead nibabel.caret nibabel.casting nibabel.cifti2 nibabel.cifti2.cifti2 nibabel.cifti2.cifti2_axes nibabel.cifti2.parse_cifti2 nibabel.cmdline nibabel.cmdline.conform nibabel.cmdline.convert nibabel.cmdline.dicomfs nibabel.cmdline.diff nibabel.cmdline.ls nibabel.cmdline.nifti_dx nibabel.cmdline.parrec2nii nibabel.cmdline.roi nibabel.cmdline.stats nibabel.cmdline.tck2trk nibabel.cmdline.trk2tck nibabel.cmdline.utils nibabel.data nibabel.dataobj_images nibabel.deprecated nibabel.deprecator nibabel.dft nibabel.ecat nibabel.environment nibabel.eulerangles nibabel.filebasedimages nibabel.fileholders nibabel.filename_parser nibabel.fileslice nibabel.fileutils nibabel.freesurfer nibabel.freesurfer.io nibabel.freesurfer.mghformat nibabel.funcs nibabel.gifti nibabel.gifti.gifti nibabel.gifti.parse_gifti_fast nibabel.gifti.util nibabel.imageclasses nibabel.imageglobals nibabel.imagestats nibabel.loadsave nibabel.minc1 nibabel.minc2 nibabel.mriutils nibabel.nicom nibabel.nicom.ascconv nibabel.nicom.csareader nibabel.nicom.dicomreaders nibabel.nicom.dicomwrappers nibabel.nicom.dwiparams nibabel.nicom.structreader nibabel.nicom.utils nibabel.nifti1 nibabel.nifti2 nibabel.onetime nibabel.openers nibabel.optpkg nibabel.orientations nibabel.parrec nibabel.pointset nibabel.processing nibabel.pydicom_compat nibabel.quaternions nibabel.rstutils nibabel.spaces nibabel.spatialimages nibabel.spm2analyze nibabel.spm99analyze nibabel.streamlines nibabel.streamlines.array_sequence nibabel.streamlines.header nibabel.streamlines.tck nibabel.streamlines.tractogram nibabel.streamlines.tractogram_file nibabel.streamlines.trk nibabel.streamlines.utils nibabel.tmpdirs nibabel.tripwire nibabel.viewers nibabel.volumeutils nibabel.wrapstruct nibabel.xmlutils ModuleProxy (class in nibabel.deprecated) mosaic_to_nii() (in module nibabel.nicom.dicomreaders) MosaicWrapper (class in nibabel.nicom.dicomwrappers) MRIError (class in nibabel.mriutils) mult() (in module nibabel.quaternions) MultiframeWrapper (class in nibabel.nicom.dicomwrappers) N n_coords (nibabel.pointset.Pointset property) n_volumes (nibabel.viewers.OrthoSlicer3D property) name (nibabel.cifti2.cifti2_axes.BrainModelAxis property) (nibabel.gifti.gifti.GiftiNVPairs property) (nibabel.openers.Opener property) named_maps (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap property) NB_POINTS (nibabel.streamlines.header.Field attribute) NB_PROPERTIES_PER_STREAMLINE (nibabel.streamlines.header.Field attribute) NB_SCALARS_PER_POINT (nibabel.streamlines.header.Field attribute) NB_STREAMLINES (nibabel.streamlines.header.Field attribute) ndim (nibabel.arrayproxy.ArrayLike property) (nibabel.arrayproxy.ArrayProxy property) (nibabel.dataobj_images.DataobjImage property) (nibabel.ecat.EcatImageArrayProxy property) (nibabel.minc1.MincImageArrayProxy property) (nibabel.parrec.PARRECArrayProxy property) (nibabel.pointset.CoordinateArray attribute) (nibabel.pointset.GridIndices attribute) nearest_pos_semi_def() (in module nibabel.nicom.dwiparams) nearly_equivalent() (in module nibabel.quaternions) nibabel module nibabel._compression module nibabel._typing module nibabel.affines module nibabel.analyze module nibabel.arrayproxy module nibabel.arraywriters module nibabel.batteryrunners module nibabel.benchmarks module nibabel.benchmarks.bench_array_to_file module nibabel.benchmarks.bench_arrayproxy_slicing module nibabel.benchmarks.bench_fileslice module nibabel.benchmarks.bench_finite_range module nibabel.benchmarks.bench_load_save module nibabel.benchmarks.butils module nibabel.brikhead module nibabel.caret module nibabel.casting module nibabel.cifti2 module nibabel.cifti2.cifti2 module nibabel.cifti2.cifti2_axes module nibabel.cifti2.parse_cifti2 module nibabel.cmdline module nibabel.cmdline.conform module nibabel.cmdline.convert module nibabel.cmdline.dicomfs module nibabel.cmdline.diff module nibabel.cmdline.ls module nibabel.cmdline.nifti_dx module nibabel.cmdline.parrec2nii module nibabel.cmdline.roi module nibabel.cmdline.stats module nibabel.cmdline.tck2trk module nibabel.cmdline.trk2tck module nibabel.cmdline.utils module nibabel.data module nibabel.dataobj_images module nibabel.deprecated module nibabel.deprecator module nibabel.dft module nibabel.ecat module nibabel.environment module nibabel.eulerangles module nibabel.filebasedimages module nibabel.fileholders module nibabel.filename_parser module nibabel.fileslice module nibabel.fileutils module nibabel.freesurfer module nibabel.freesurfer.io module nibabel.freesurfer.mghformat module nibabel.funcs module nibabel.gifti module nibabel.gifti.gifti module nibabel.gifti.parse_gifti_fast module nibabel.gifti.util module nibabel.imageclasses module nibabel.imageglobals module nibabel.imagestats module nibabel.loadsave module nibabel.minc1 module nibabel.minc2 module nibabel.mriutils module nibabel.nicom module nibabel.nicom.ascconv module nibabel.nicom.csareader module nibabel.nicom.dicomreaders module nibabel.nicom.dicomwrappers module nibabel.nicom.dwiparams module nibabel.nicom.structreader module nibabel.nicom.utils module nibabel.nifti1 module nibabel.nifti2 module nibabel.onetime module nibabel.openers module nibabel.optpkg module nibabel.orientations module nibabel.parrec module nibabel.pointset module nibabel.processing module nibabel.pydicom_compat module nibabel.quaternions module nibabel.rstutils module nibabel.spaces module nibabel.spatialimages module nibabel.spm2analyze module nibabel.spm99analyze module nibabel.streamlines module nibabel.streamlines.array_sequence module nibabel.streamlines.header module nibabel.streamlines.tck module nibabel.streamlines.tractogram module nibabel.streamlines.tractogram_file module nibabel.streamlines.trk module nibabel.streamlines.utils module nibabel.tmpdirs module nibabel.tripwire module nibabel.viewers module nibabel.volumeutils module nibabel.wrapstruct module nibabel.xmlutils module Nifti1DicomExtension (class in nibabel.nifti1) Nifti1Extension (class in nibabel.nifti1) Nifti1Extensions (class in nibabel.nifti1) Nifti1Header (class in nibabel.nifti1) Nifti1Image (class in nibabel.nifti1) Nifti1Pair (class in nibabel.nifti1) Nifti1PairHeader (class in nibabel.nifti1) Nifti2Header (class in nibabel.nifti2) Nifti2Image (class in nibabel.nifti2) Nifti2Pair (class in nibabel.nifti2) Nifti2PairHeader (class in nibabel.nifti2) nifti_header (nibabel.cifti2.cifti2.Cifti2Image property) NiftiExtension (class in nibabel.nifti1) none_or_close() (in module nibabel.nicom.dicomwrappers) norm() (in module nibabel.quaternions) NoValue (class in nibabel.nicom.ascconv) nt_str() (in module nibabel.nicom.csareader) num_dim (nibabel.gifti.gifti.GiftiDataArray property) number_of_mapped_indices (nibabel.cifti2.cifti2.Cifti2Header property) numDA (nibabel.gifti.gifti.GiftiImage property) O obj_from_atoms() (in module nibabel.nicom.ascconv) obliquity() (in module nibabel.affines) offset (nibabel.arrayproxy.ArrayProxy property) ok_floats() (in module nibabel.casting) on_powerpc() (in module nibabel.casting) one_line() (in module nibabel.parrec) open() (nibabel.cmdline.dicomfs.DICOMFS method) Opener (class in nibabel.openers) optimize_read_slicers() (in module nibabel.fileslice) optimize_slicer() (in module nibabel.fileslice) optional_package() (in module nibabel.optpkg) OrientationError (class in nibabel.orientations) ORIGIN (nibabel.streamlines.header.Field attribute) ornt2axcodes() (in module nibabel.orientations) ornt_transform() (in module nibabel.orientations) OrthoSlicer3D (class in nibabel.viewers) orthoview() (nibabel.spatialimages.SpatialImage method) out_dtype (nibabel.arraywriters.ArrayWriter property) P pair_magic (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti2.Nifti2Header attribute) pair_vox_offset (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti2.Nifti2Header attribute) parcels (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap property) ParcelsAxis (class in nibabel.cifti2.cifti2_axes) PARRECArrayProxy (class in nibabel.parrec) PARRECError (class in nibabel.parrec) PARRECHeader (class in nibabel.parrec) PARRECImage (class in nibabel.parrec) parse() (nibabel.xmlutils.XmlParser method) parse_AFNI_header() (in module nibabel.brikhead) parse_args() (in module nibabel.cmdline.tck2trk) (in module nibabel.cmdline.trk2tck) parse_ascconv() (in module nibabel.nicom.ascconv) parse_filename() (in module nibabel.filename_parser) parse_PAR_header() (in module nibabel.parrec) parse_slice() (in module nibabel.cmdline.roi) parser (nibabel.gifti.gifti.GiftiImage attribute) path_maybe_image() (nibabel.filebasedimages.FileBasedImage class method) peek_next() (in module nibabel.streamlines.utils) pending_data (nibabel.cifti2.parse_cifti2.Cifti2Parser property) (nibabel.gifti.parse_gifti_fast.GiftiImageParser property) PerArrayDict (class in nibabel.streamlines.tractogram) PerArraySequenceDict (class in nibabel.streamlines.tractogram) PHILIPS (nibabel.nicom.utils.Vendor attribute) Pointset (class in nibabel.pointset) pop_cifti2_vertices() (nibabel.cifti2.cifti2.Cifti2Parcel method) position (nibabel.viewers.OrthoSlicer3D property) predict_shape() (in module nibabel.fileslice) pretty_mapping() (in module nibabel.volumeutils) print_git_title() (in module nibabel.benchmarks.butils) print_summary() (nibabel.gifti.gifti.GiftiCoordSystem method) (nibabel.gifti.gifti.GiftiDataArray method) (nibabel.gifti.gifti.GiftiImage method) (nibabel.gifti.gifti.GiftiLabelTable method) (nibabel.gifti.gifti.GiftiMetaData method) proc_file() (in module nibabel.cmdline.ls) (in module nibabel.cmdline.parrec2nii) Q q2bg() (in module nibabel.nicom.dwiparams) q_vector (nibabel.nicom.dicomwrappers.SiemensWrapper property) (nibabel.nicom.dicomwrappers.Wrapper attribute) quat2angle_axis() (in module nibabel.quaternions) quat2euler() (in module nibabel.eulerangles) quat2mat() (in module nibabel.quaternions) quaternion_threshold (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti2.Nifti2Header attribute) R raw_data_from_fileobj() (nibabel.analyze.AnalyzeHeader method) (nibabel.ecat.EcatSubHeader method) read() (in module nibabel.nicom.csareader) (nibabel.cmdline.dicomfs.DICOMFS method) (nibabel.nicom.structreader.Unpacker method) (nibabel.openers.Fileish method) (nibabel.openers.Opener method) read_annot() (in module nibabel.freesurfer.io) read_data_block() (in module nibabel.gifti.parse_gifti_fast) read_geometry() (in module nibabel.freesurfer.io) read_img_data() (in module nibabel.loadsave) read_label() (in module nibabel.freesurfer.io) read_mlist() (in module nibabel.ecat) read_morph_data() (in module nibabel.freesurfer.io) read_mosaic_dir() (in module nibabel.nicom.dicomreaders) read_mosaic_dwi_dir() (in module nibabel.nicom.dicomreaders) read_segments() (in module nibabel.fileslice) read_subheaders() (in module nibabel.ecat) read_zt_byte_strings() (in module nibabel.fileutils) readdir() (nibabel.cmdline.dicomfs.DICOMFS method) readinto() (nibabel.openers.Opener method) rec2dict() (in module nibabel.volumeutils) Recoder (class in nibabel.volumeutils) release() (nibabel.cmdline.dicomfs.DICOMFS method) remove_gifti_data_array() (nibabel.gifti.gifti.GiftiImage method) remove_gifti_data_array_by_intent() (nibabel.gifti.gifti.GiftiImage method) Report (class in nibabel.batteryrunners) resample_from_to() (in module nibabel.processing) resample_to_output() (in module nibabel.processing) rescale_affine() (in module nibabel.affines) reset() (nibabel.arraywriters.SlopeArrayWriter method) (nibabel.arraywriters.SlopeInterArrayWriter method) (nibabel.onetime.ResetMixin method) ResetMixin (class in nibabel.onetime) reshape() (nibabel.arrayproxy.ArrayProxy method) reshape_dataobj() (in module nibabel.arrayproxy) rgba (nibabel.cifti2.cifti2.Cifti2Label property) (nibabel.gifti.gifti.GiftiLabel property) rotate_vector() (in module nibabel.quaternions) rotation_matrix (nibabel.nicom.dicomwrappers.Wrapper property) rst_table() (in module nibabel.rstutils) run_slices() (in module nibabel.benchmarks.bench_fileslice) rw (nibabel.analyze.AnalyzeImage attribute) (nibabel.brikhead.AFNIImage attribute) (nibabel.cifti2.cifti2.Cifti2Image attribute) (nibabel.filebasedimages.FileBasedImage attribute) (nibabel.freesurfer.mghformat.MGHImage attribute) (nibabel.minc1.Minc1Image attribute) (nibabel.nifti1.Nifti1Pair attribute) (nibabel.parrec.PARRECImage attribute) (nibabel.spm99analyze.Spm99AnalyzeImage attribute) S safe_get() (in module nibabel.cmdline.utils) same_file_as() (nibabel.fileholders.FileHolder method) sanitize() (in module nibabel.cmdline.roi) save() (in module nibabel.loadsave) (in module nibabel.nifti1) (in module nibabel.nifti2) (in module nibabel.streamlines) (nibabel.streamlines.array_sequence.ArraySequence method) (nibabel.streamlines.tck.TckFile method) (nibabel.streamlines.tractogram_file.TractogramFile method) (nibabel.streamlines.trk.TrkFile method) ScalarAxis (class in nibabel.cifti2.cifti2_axes) scale_factors (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) scaling (nibabel.brikhead.AFNIArrayProxy property) scaling_needed() (nibabel.arraywriters.ArrayWriter method) (nibabel.arraywriters.SlopeArrayWriter method) ScalingError (class in nibabel.arraywriters) seek() (nibabel.openers.Opener method) seek_tell() (in module nibabel.volumeutils) SerializableImage (class in nibabel.filebasedimages) series_signature (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.SiemensWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) SeriesAxis (class in nibabel.cifti2.cifti2_axes) set_data_dtype() (nibabel.analyze.AnalyzeHeader method) (nibabel.analyze.AnalyzeImage method) (nibabel.cifti2.cifti2.Cifti2Image method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.Nifti1Pair method) (nibabel.spatialimages.HasDtype method) (nibabel.spatialimages.SpatialHeader method) (nibabel.spatialimages.SpatialImage method) set_data_offset() (nibabel.analyze.AnalyzeHeader method) (nibabel.parrec.PARRECHeader method) set_data_shape() (nibabel.analyze.AnalyzeHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.nifti1.Nifti1Header method) (nibabel.nifti2.Nifti2Header method) (nibabel.spatialimages.SpatialHeader method) set_dim_info() (nibabel.nifti1.Nifti1Header method) set_filename() (nibabel.filebasedimages.FileBasedImage method) set_intent() (nibabel.nifti1.Nifti1Header method) set_origin_from_affine() (nibabel.spm99analyze.Spm99AnalyzeHeader method) set_position() (nibabel.viewers.OrthoSlicer3D method) set_qform() (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.Nifti1Pair method) set_sform() (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.Nifti1Pair method) set_slice_duration() (nibabel.nifti1.Nifti1Header method) set_slice_times() (nibabel.nifti1.Nifti1Header method) set_slope_inter() (nibabel.analyze.AnalyzeHeader method) (nibabel.nifti1.Nifti1Header method) (nibabel.spm99analyze.SpmAnalyzeHeader method) set_volume_idx() (nibabel.viewers.OrthoSlicer3D method) set_xyzt_units() (nibabel.nifti1.Nifti1Header method) set_zooms() (nibabel.analyze.AnalyzeHeader method) (nibabel.freesurfer.mghformat.MGHHeader method) (nibabel.spatialimages.SpatialHeader method) shape (nibabel.arrayproxy.ArrayLike attribute) (nibabel.arrayproxy.ArrayProxy property) (nibabel.dataobj_images.DataobjImage property) (nibabel.ecat.EcatImage property) (nibabel.ecat.EcatImageArrayProxy property) (nibabel.minc1.MincImageArrayProxy property) (nibabel.parrec.PARRECArrayProxy property) (nibabel.pointset.CoordinateArray attribute) (nibabel.pointset.GridIndices attribute) shape_zoom_affine() (in module nibabel.volumeutils) shared_range() (in module nibabel.casting) show() (nibabel.viewers.OrthoSlicer3D method) shrink_data() (nibabel.streamlines.array_sequence.ArraySequence method) SIEMENS (nibabel.nicom.utils.Vendor attribute) SiemensWrapper (class in nibabel.nicom.dicomwrappers) sigma2fwhm() (in module nibabel.processing) single_magic (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti2.Nifti2Header attribute) single_vox_offset (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti2.Nifti2Header attribute) size (nibabel.cifti2.cifti2_axes.Axis property) (nibabel.cifti2.cifti2_axes.SeriesAxis attribute) sizeof_hdr (nibabel.analyze.AnalyzeHeader attribute) (nibabel.nifti2.Nifti2Header attribute) slice2len() (in module nibabel.fileslice) slice2outax() (in module nibabel.fileslice) slice2volume() (in module nibabel.spaces) slice_affine() (nibabel.spatialimages.SpatialFirstSlicer method) slice_indicator (nibabel.nicom.dicomwrappers.Wrapper property) slice_normal (nibabel.nicom.dicomwrappers.SiemensWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) SliceableDataDict (class in nibabel.streamlines.tractogram) slicer (nibabel.spatialimages.SpatialImage property) slicers2segments() (in module nibabel.fileslice) slices_to_series() (in module nibabel.nicom.dicomreaders) slope (nibabel.arrayproxy.ArrayProxy property) (nibabel.arraywriters.SlopeArrayWriter property) SlopeArrayWriter (class in nibabel.arraywriters) SlopeInterArrayWriter (class in nibabel.arraywriters) smooth_image() (in module nibabel.processing) spatial_axes_first() (in module nibabel.imageclasses) SpatialFirstSlicer (class in nibabel.spatialimages) SpatialHeader (class in nibabel.spatialimages) SpatialImage (class in nibabel.spatialimages) SpatialProtocol (class in nibabel.spatialimages) splitext_addext() (in module nibabel.filename_parser) Spm2AnalyzeHeader (class in nibabel.spm2analyze) Spm2AnalyzeImage (class in nibabel.spm2analyze) Spm99AnalyzeHeader (class in nibabel.spm99analyze) Spm99AnalyzeImage (class in nibabel.spm99analyze) SpmAnalyzeHeader (class in nibabel.spm99analyze) squeeze_image() (in module nibabel.funcs) StartElementHandler() (nibabel.cifti2.parse_cifti2.Cifti2Parser method) (nibabel.gifti.parse_gifti_fast.GiftiImageParser method) (nibabel.xmlutils.XmlParser method) STEP_SIZE (nibabel.streamlines.header.Field attribute) streamlines (nibabel.streamlines.tractogram.LazyTractogram property) (nibabel.streamlines.tractogram.Tractogram property) (nibabel.streamlines.tractogram_file.TractogramFile property) strided_scalar() (in module nibabel.fileslice) structarr (nibabel.wrapstruct.WrapStruct property) subheader_class (nibabel.ecat.EcatImage attribute) supported_np_types() (in module nibabel.spatialimages) SUPPORTS_DATA_PER_POINT (nibabel.streamlines.tck.TckFile attribute) (nibabel.streamlines.trk.TrkFile attribute) SUPPORTS_DATA_PER_STREAMLINE (nibabel.streamlines.tck.TckFile attribute) (nibabel.streamlines.trk.TrkFile attribute) surface_mask (nibabel.cifti2.cifti2_axes.BrainModelAxis property) surfaces (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap property) T table2string() (in module nibabel.cmdline.utils) TckFile (class in nibabel.streamlines.tck) tell() (nibabel.openers.Opener method) template_dtype (nibabel.analyze.AnalyzeHeader attribute) (nibabel.ecat.EcatHeader attribute) (nibabel.freesurfer.mghformat.MGHHeader attribute) (nibabel.nifti1.Nifti1Header attribute) (nibabel.nifti2.Nifti2Header attribute) (nibabel.spm2analyze.Spm2AnalyzeHeader attribute) (nibabel.spm99analyze.SpmAnalyzeHeader attribute) (nibabel.wrapstruct.WrapStruct attribute) TemporaryDirectory (class in nibabel.tmpdirs) test() (in module nibabel) text (nibabel.nifti1.NiftiExtension property) threshold_heuristic() (in module nibabel.fileslice) time (nibabel.cifti2.cifti2_axes.SeriesAxis property) to_bytes() (nibabel.filebasedimages.SerializableImage method) (nibabel.gifti.gifti.GiftiImage method) to_cifti_brain_structure_name() (nibabel.cifti2.cifti2_axes.BrainModelAxis static method) to_file_map() (nibabel.analyze.AnalyzeImage method) (nibabel.cifti2.cifti2.Cifti2Image method) (nibabel.ecat.EcatImage method) (nibabel.filebasedimages.FileBasedImage method) (nibabel.freesurfer.mghformat.MGHImage method) (nibabel.gifti.gifti.GiftiImage method) (nibabel.nifti1.Nifti1Pair method) (nibabel.spm99analyze.Spm99AnalyzeImage method) to_filename() (nibabel.filebasedimages.FileBasedImage method) to_fileobj() (nibabel.arraywriters.ArrayWriter method) (nibabel.arraywriters.SlopeArrayWriter method) (nibabel.arraywriters.SlopeInterArrayWriter method) to_header() (in module nibabel.cifti2.cifti2_axes) to_mapping() (nibabel.cifti2.cifti2_axes.BrainModelAxis method) (nibabel.cifti2.cifti2_axes.LabelAxis method) (nibabel.cifti2.cifti2_axes.ParcelsAxis method) (nibabel.cifti2.cifti2_axes.ScalarAxis method) (nibabel.cifti2.cifti2_axes.SeriesAxis method) to_mask() (nibabel.pointset.Grid method) to_matvec() (in module nibabel.affines) to_stream() (nibabel.filebasedimages.SerializableImage method) to_world() (nibabel.streamlines.tractogram.LazyTractogram method) (nibabel.streamlines.tractogram.Tractogram method) to_xml() (nibabel.gifti.gifti.GiftiImage method) (nibabel.xmlutils.XmlSerializable method) total_nb_rows (nibabel.streamlines.array_sequence.ArraySequence property) Tractogram (class in nibabel.streamlines.tractogram) tractogram (nibabel.streamlines.tractogram_file.TractogramFile property) TractogramFile (class in nibabel.streamlines.tractogram_file) TractogramItem (class in nibabel.streamlines.tractogram) TripWire (class in nibabel.tripwire) TripWireError (class in nibabel.tripwire) TrkFile (class in nibabel.streamlines.trk) type_info() (in module nibabel.casting) types_filenames() (in module nibabel.filename_parser) TypesFilenamesError (class in nibabel.filename_parser) U ulp() (in module nibabel.casting) uncache() (nibabel.dataobj_images.DataobjImage method) unit (nibabel.cifti2.cifti2_axes.SeriesAxis property) unpack() (nibabel.nicom.structreader.Unpacker method) Unpacker (class in nibabel.nicom.structreader) update_cache() (in module nibabel.dft) update_header() (nibabel.nifti1.Nifti1Image method) (nibabel.nifti1.Nifti1Pair method) (nibabel.spatialimages.SpatialImage method) update_headers() (nibabel.cifti2.cifti2.Cifti2Image method) V valid_exts (nibabel.analyze.AnalyzeImage attribute) (nibabel.brikhead.AFNIImage attribute) (nibabel.cifti2.cifti2.Cifti2Image attribute) (nibabel.ecat.EcatImage attribute) (nibabel.filebasedimages.FileBasedImage attribute) (nibabel.freesurfer.mghformat.MGHImage attribute) (nibabel.gifti.gifti.GiftiImage attribute) (nibabel.minc1.Minc1Image attribute) (nibabel.nifti1.Nifti1Image attribute) (nibabel.parrec.PARRECImage attribute) value (nibabel.gifti.gifti.GiftiNVPairs property) value_set() (nibabel.volumeutils.Recoder method) values() (nibabel.wrapstruct.WrapStruct method) Vendor (class in nibabel.nicom.utils) vendor (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.SiemensWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) vendor_from_private() (in module nibabel.nicom.utils) verbose() (in module nibabel.cmdline.parrec2nii) (in module nibabel.cmdline.utils) VersionedDatasource (class in nibabel.data) vertex_indices (nibabel.cifti2.cifti2.Cifti2BrainModel property) VisibleDeprecationWarning (class in nibabel.deprecated) vol_is_full() (in module nibabel.parrec) vol_numbers() (in module nibabel.parrec) volume (nibabel.cifti2.cifti2.Cifti2MatrixIndicesMap property) volume_mask (nibabel.cifti2.cifti2_axes.BrainModelAxis property) volume_shape (nibabel.cifti2.cifti2_axes.BrainModelAxis property) (nibabel.cifti2.cifti2_axes.ParcelsAxis property) VolumeError (class in nibabel.dft) vox2out_vox() (in module nibabel.spaces) voxel_indices_ijk (nibabel.cifti2.cifti2.Cifti2BrainModel property) (nibabel.cifti2.cifti2.Cifti2Parcel property) VOXEL_ORDER (nibabel.streamlines.header.Field attribute) voxel_sizes (nibabel.nicom.dicomwrappers.MultiframeWrapper property) (nibabel.nicom.dicomwrappers.Wrapper property) VOXEL_SIZES (nibabel.streamlines.header.Field attribute) voxel_sizes() (in module nibabel.affines) VOXEL_TO_RASMM (nibabel.streamlines.header.Field attribute) W warn_message (nibabel.deprecated.FutureWarningMixin attribute) working_type() (in module nibabel.volumeutils) Wrapper (class in nibabel.nicom.dicomwrappers) wrapper_from_data() (in module nibabel.nicom.dicomwrappers) wrapper_from_file() (in module nibabel.nicom.dicomwrappers) WrapperError (class in nibabel.nicom.dicomwrappers) WrapperPrecisionError (class in nibabel.nicom.dicomwrappers) WrapStruct (class in nibabel.wrapstruct) WrapStructError (class in nibabel.wrapstruct) write() (nibabel.openers.Fileish method) (nibabel.openers.Opener method) write_annot() (in module nibabel.freesurfer.io) write_geometry() (in module nibabel.freesurfer.io) write_morph_data() (in module nibabel.freesurfer.io) write_raise() (nibabel.batteryrunners.Report method) write_to() (nibabel.filebasedimages.FileBasedHeader method) (nibabel.nifti1.Nifti1Extensions method) (nibabel.nifti1.Nifti1Header method) (nibabel.nifti1.NiftiExtension method) (nibabel.wrapstruct.WrapStruct method) write_zeros() (in module nibabel.volumeutils) writeftr_to() (nibabel.freesurfer.mghformat.MGHHeader method) writehdr_to() (nibabel.freesurfer.mghformat.MGHHeader method) writelines() (nibabel.openers.Opener method) WriterError (class in nibabel.arraywriters) X XmlBasedHeader (class in nibabel.xmlutils) XmlParser (class in nibabel.xmlutils) XmlSerializable (class in nibabel.xmlutils) Z zstd_def (nibabel.openers.Opener attribute) zstd_open() (in module nibabel._compression)
