API Documentation

nibabel

Read / write access to some common neuroimaging file formats

File Formats

analyze

Read / write access to the basic Mayo Analyze format

spm2analyze

Read / write access to SPM2 version of analyze image format

spm99analyze

Read / write access to SPM99 version of analyze image format

cifti2

CIFTI-2 format IO

gifti

GIfTI format IO

freesurfer

Reading functions for freesurfer files

minc1

Read MINC1 format images

minc2

Preliminary MINC2 support

nicom

DICOM reader

nifti1

Read / write access to NIfTI1 image format

nifti2

Read / write access to NIfTI2 image format

ecat

Read ECAT format images

parrec

Read images in PAR/REC format.

streamlines

Multiformat-capable streamline format read / write interface

trackvis

Read and write trackvis files (old interface)

Image Utilities

eulerangles

Module implementing Euler angle rotations and their conversions

funcs

Processor functions for images

imageclasses

Define supported image classes and names

imageglobals

Defaults for images and headers

loadsave

Utilities to load and save image objects

orientations

Utilities for calculating and applying affine orientations

quaternions

Functions to operate on, or return, quaternions.

spatialimages

A simple spatial image class

volumeutils

Utility functions for analyze-like formats

Float / integer conversion

arraywriters

Array writer objects

casting

Utilties for casting numpy values in various ways

System utilities

data

Utilities to find files from NIPY data packages

environment

Settings from the system environment relevant to NIPY

Miscellaneous Helpers

arrayproxy

Array proxy base class

affines

Utility routines for working with points and affine transforms

batteryrunners

Battery runner classes and Report classes

data

Utilities to find files from NIPY data packages

dft

DICOM filesystem tools

fileholders

Fileholder class

filename_parser

Create filename pairs, triplets etc, with expected extensions

fileslice

Utilities for getting array slices out of file-like objects

onetime

Descriptor support for NIPY.

openers

Context manager openers for various fileobject types

optpkg

Routines to support optional packages

rstutils

ReStructured Text utilities

tmpdirs

Contexts for with statement providing temporary directories

tripwire

Class to raise error for missing modules or other misfortunes

wrapstruct

Class to wrap numpy structured array