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Access a cacophony of neuro-imaging file formats

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Coordinate systems and affines

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General tutorialsΒΆ

  • Coordinate systems and affines
    • Introducing Someone
    • Voxel coordinates are coordinates in the image data array
    • Voxel coordinates and points in space
    • The scanner-subject reference space
      • The scanner axes
      • From scanner to subject
      • Naming reference spaces
    • Voxel coordinates are in voxel space
    • The affine matrix as a transformation between spaces
    • The inverse of the affine gives the mapping from scanner to voxel
    • The affine by example
      • Applying the affine
      • The affine as a series of transformations
    • Other reference spaces
    • Nibabel always uses an RAS+ output space
  • Radiological vs neurological conventions
    • Neurological and radiological display convention
    • Alignment of world and voxel axes
    • Neurological / radiological voxel layout
  • Introduction to DICOM
    • DICOM is messages
    • The DICOM standard
    • DICOM data format
      • DICOM elements
        • Attribute Tag
          • Standard attribute tags
          • Private attribute tags
        • Value Representation
        • Value length
        • Value field
      • Data element tags and data dictionaries
        • Value Representation in the data dictionary
        • Value Multiplicity in the data dictionary
      • DICOM data structures
        • A data set
        • Background - the DICOM world
        • DICOM Entities and Information Object Definitions
      • DICOM services (DIMSE)
      • DICOM service object pairs (SOPs)
      • DICOM files
© Copyright 2006, NiBabel developers <neuroimaging@python.org>. Created using Sphinx 8.0.2.