Index

_ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z

_

__init__() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
(nipy.core.image.image.Image method)
(nipy.core.image.image.SliceMaker method)
(nipy.core.image.image_list.ImageList method)
(nipy.core.reference.array_coords.ArrayCoordMap method)
(nipy.core.reference.array_coords.Grid method)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.AxisError method)
(nipy.core.reference.coordinate_map.CoordMapMaker method)
(nipy.core.reference.coordinate_map.CoordMapMakerError method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordSysMaker method)
(nipy.core.reference.coordinate_system.CoordSysMakerError method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
(nipy.core.reference.coordinate_system.CoordinateSystemError method)
(nipy.core.reference.spaces.AffineError method)
(nipy.core.reference.spaces.AxesError method)
(nipy.core.reference.spaces.SpaceError method)
(nipy.core.reference.spaces.SpaceTypeError method)
(nipy.core.reference.spaces.XYZSpace method)
(nipy.interfaces.spm.SpmInfo method)
(nipy.io.nifti_ref.NiftiError method)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.CompositionError method)
(nipy.labs.datasets.transforms.transform.Transform method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
(nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
(nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.CutAxes method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
(nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)
(nipy.modalities.fmri.fmri.FmriImageList method)
(nipy.modalities.fmri.fmristat.outputters.RegressionOutput method)
(nipy.modalities.fmri.fmristat.outputters.RegressionOutputList method)
(nipy.modalities.fmri.fmristat.outputters.TOutput method)
(nipy.testing.doctester.NipyDoctest method)
(nipy.testing.nosetester.NipyNoseTester method)

A

add_options() (nipy.testing.doctester.NipyDoctest method)
addOptions() (nipy.testing.doctester.NipyDoctest method)
affine (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
affine() (nipy.core.image.image.Image method)
affine_img_src() (in module nipy.labs.viz_tools.maps_3d), [1]
affine_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute)
AffineError (class in nipy.core.reference.spaces)
AffineTransform (class in nipy.core.reference.coordinate_map)
(class in nipy.labs.datasets.transforms.affine_transform)
AFNI
afterContext() (nipy.testing.doctester.NipyDoctest method)
alpha_cmap() (in module nipy.labs.viz_tools.cm)
annotate() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
append_io_dim() (in module nipy.core.reference.coordinate_map)
apply_affine() (in module nipy.labs.datasets.transforms.affine_utils)
args (nipy.core.reference.coordinate_map.AxisError attribute)
(nipy.core.reference.coordinate_map.CoordMapMakerError attribute)
(nipy.core.reference.coordinate_system.CoordSysMakerError attribute)
(nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.reference.spaces.AffineError attribute)
(nipy.core.reference.spaces.AxesError attribute)
(nipy.core.reference.spaces.SpaceError attribute)
(nipy.core.reference.spaces.SpaceTypeError attribute)
(nipy.io.nifti_ref.NiftiError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
ArrayCoordMap (class in nipy.core.reference.array_coords)
as_image() (in module nipy.io.files)
as_map() (nipy.core.reference.spaces.XYZSpace method)
as_tuple() (nipy.core.reference.spaces.XYZSpace method)
as_volume_img() (in module nipy.labs.datasets.converters)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
as_xyz_image() (in module nipy.core.image.image_spaces)
autocrop_img() (in module nipy.labs.viz_tools.maps_3d)
axes() (nipy.core.image.image.Image method)
AxesError (class in nipy.core.reference.spaces)
axis0_generator() (in module nipy.modalities.fmri.fmri)
AxisError (class in nipy.core.reference.coordinate_map)
axmap() (in module nipy.core.reference.coordinate_map)

B

BaseSlicer (class in nipy.labs.viz_tools.slicers)
BaseStackedSlicer (class in nipy.labs.viz_tools.slicers)
bench() (nipy.testing.nosetester.NipyNoseTester method)
BlockParadigm (class in nipy.modalities.fmri.experimental_paradigm)
BOLD
bounding_box() (in module nipy.core.reference.slices)
BrainVisa
BSD
build_landmarks() (in module nipy.labs.spatial_models.structural_bfls)

C

can_configure (nipy.testing.doctester.NipyDoctest attribute)
centers() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
check() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
check_deps() (in module nipy.utils.perlpie)
check_output() (nipy.testing.doctester.NipyOutputChecker method)
compose() (in module nipy.core.reference.coordinate_map)
composed_with() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
composed_with_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
CompositionError (class in nipy.labs.datasets.transforms.transform)
compute_mask() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_files() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_mask_sessions() (in module nipy.labs.mask)
(in module nipy.labs.utils.mask)
compute_regressor() (in module nipy.modalities.fmri.hemodynamic_models)
configure() (nipy.testing.doctester.NipyDoctest method)
contour_map() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
coord_dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_names (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
coord_sys_klass (nipy.core.reference.coordinate_system.CoordSysMaker attribute)
coord_transform() (in module nipy.labs.viz_tools.coord_tools)
CoordinateMap (class in nipy.core.reference.coordinate_map)
CoordinateSystem (class in nipy.core.reference.coordinate_system)
CoordinateSystemError (class in nipy.core.reference.coordinate_system)
coordmap (nipy.core.image.image.Image attribute)
CoordMapMaker (class in nipy.core.reference.coordinate_map)
CoordMapMakerError (class in nipy.core.reference.coordinate_map)
CoordSysMaker (class in nipy.core.reference.coordinate_system)
CoordSysMakerError (class in nipy.core.reference.coordinate_system)
copy() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
CutAxes (class in nipy.labs.viz_tools.slicers)

D

data_generator() (in module nipy.core.utils.generators)
demo_ortho_slicer() (in module nipy.labs.viz_tools.slicers)
demo_plot_map() (in module nipy.labs.viz_tools.activation_maps)
demo_plot_map_3d() (in module nipy.labs.viz_tools.maps_3d)
DesignMatrix (class in nipy.modalities.fmri.design_matrix)
dim_cmap() (in module nipy.labs.viz_tools.cm)
dmtx_from_csv() (in module nipy.modalities.fmri.design_matrix)
dmtx_light() (in module nipy.modalities.fmri.design_matrix)
do_cut() (nipy.labs.viz_tools.slicers.CutAxes method)
doctest_case_class (nipy.testing.doctester.NipyDoctest attribute)
doctest_ignore (nipy.testing.doctester.NipyDoctest attribute)
doctest_optflags (nipy.testing.doctester.NipyDoctest attribute)
draw_cross() (nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
draw_cut() (nipy.labs.viz_tools.slicers.CutAxes method)
draw_left_right() (nipy.labs.viz_tools.slicers.CutAxes method)
draw_position() (nipy.labs.viz_tools.slicers.CutAxes method)
drop_io_dim() (in module nipy.core.reference.coordinate_map)
DTI
dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
DWI

E

edge_map() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
EEGlab
enabled (nipy.testing.doctester.NipyDoctest attribute)
enableOpt (nipy.testing.doctester.NipyDoctest attribute)
equivalent() (in module nipy.core.reference.coordinate_map)
EventRelatedParadigm (class in nipy.modalities.fmri.experimental_paradigm)
excludes (nipy.testing.nosetester.NipyNoseTester attribute)
extension (nipy.testing.doctester.NipyDoctest attribute)

F

f_generator() (in module nipy.core.utils.generators)
fdr() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
fdrcurve() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
find_cut_coords() (in module nipy.labs.viz_tools.coord_tools)
(nipy.labs.viz_tools.slicers.BaseSlicer static method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer class method)
(nipy.labs.viz_tools.slicers.OrthoSlicer static method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
find_maxsep_cut_coords() (in module nipy.labs.viz_tools.coord_tools)
find_mni_template() (in module nipy.labs.viz_tools.anat_cache)
fltcols() (in module nipy.interfaces.spm)
FMRI
FmriImageList (class in nipy.modalities.fmri.fmri)
fname_presuffix() (in module nipy.interfaces.spm)
fnames_presuffix() (in module nipy.interfaces.spm)
fpw_opt_str() (in module nipy.testing.nosetester)
from_image() (nipy.core.image.image.Image class method)
(nipy.core.image.image_list.ImageList class method)
(nipy.modalities.fmri.fmri.FmriImageList class method)
from_matrix_vector() (in module nipy.labs.datasets.transforms.affine_utils)
from_params() (nipy.core.reference.coordinate_map.AffineTransform static method)
from_shape() (nipy.core.reference.array_coords.ArrayCoordMap static method)
from_start_step() (nipy.core.reference.coordinate_map.AffineTransform static method)
fromarray() (in module nipy.core.image.image)
FSL
function (nipy.core.reference.coordinate_map.CoordinateMap attribute)
function_domain (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
function_range (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)

G

generic_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute)
get_affine() (in module nipy.io.nibcompat)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_bounds() (in module nipy.labs.datasets.transforms.affine_utils)
get_data() (nipy.core.image.image.Image method)
(nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_dataobj() (in module nipy.io.nibcompat)
get_feature() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
get_header() (in module nipy.io.nibcompat)
get_inverse() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
(nipy.labs.datasets.transforms.transform.Transform method)
get_list_data() (nipy.core.image.image_list.ImageList method)
(nipy.modalities.fmri.fmri.FmriImageList method)
get_mask_bounds() (in module nipy.labs.viz_tools.coord_tools)
get_object_bounds() (nipy.labs.viz_tools.slicers.CutAxes method)
get_pkg_info() (in module nipy.pkg_info)
get_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_unscaled_data() (in module nipy.io.nibcompat)
get_world_coords() (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
get_world_cs() (in module nipy.core.reference.spaces)
glover_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
glover_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
GPL
Grid (class in nipy.core.reference.array_coords)

H

header (nipy.core.image.image.Image attribute)
help() (nipy.testing.doctester.NipyDoctest method)

I

ICA
identity() (nipy.core.reference.coordinate_map.AffineTransform static method)
if_datasource() (in module nipy.testing.decorators)
if_example_data() (in module nipy.testing.decorators)
if_templates() (in module nipy.testing.decorators)
ignore_dtype() (in module nipy.testing.doctester)
Image (class in nipy.core.image.image)
ImageList (class in nipy.core.image.image_list)
index() (nipy.core.reference.coordinate_system.CoordinateSystem method)
init_with_figure() (nipy.labs.viz_tools.slicers.BaseSlicer class method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
input_axis_index() (in module nipy.core.reference.coordinate_map)
input_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.transforms.transform.Transform attribute)
interpolation (nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
intersect_masks() (in module nipy.labs.mask)
inverse() (nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
inverse_function (nipy.core.reference.coordinate_map.CoordinateMap attribute)
inverse_mapping (nipy.labs.datasets.transforms.transform.Transform attribute)
inverse_mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
io_axis_indices() (in module nipy.core.reference.coordinate_map)
is_coordsys() (in module nipy.core.reference.coordinate_system)
is_coordsys_maker() (in module nipy.core.reference.coordinate_system)
is_image() (in module nipy.core.image.image)
is_iterable() (in module nipy.utils.utilities)
is_numlike() (in module nipy.utils.utilities)
is_xyz_affable() (in module nipy.core.image.image_spaces)
(in module nipy.core.reference.spaces)
is_xyz_space() (in module nipy.core.reference.spaces)
iter_axis() (in module nipy.core.image.image)

K

kernel_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
known_space() (in module nipy.core.reference.spaces)
knownfailure() (in module nipy.testing.decorators)

L

LandmarkRegions (class in nipy.labs.spatial_models.structural_bfls)
largest_cc() (in module nipy.labs.mask)
learn() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
LGPL
like_from_data() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
load() (in module nipy.io.files)
load_paradigm_from_csv_file() (in module nipy.modalities.fmri.experimental_paradigm)
loadTestsFromFile() (nipy.testing.doctester.NipyDoctest method)
loadTestsFromModule() (nipy.testing.doctester.NipyDoctest method)

M

m2screenshot() (in module nipy.labs.viz_tools.maps_3d)
main() (in module nipy.utils.perlpie)
make_affine() (nipy.core.reference.coordinate_map.CoordMapMaker method)
make_cmap() (nipy.core.reference.coordinate_map.CoordMapMaker method)
make_dmtx() (in module nipy.modalities.fmri.design_matrix)
make_feature() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
make_job() (in module nipy.interfaces.spm)
make_label_dec() (in module nipy.testing.decorators)
make_xyz_image() (in module nipy.core.image.image_spaces)
makeTest() (nipy.testing.doctester.NipyDoctest method)
map_label() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
mapping (nipy.labs.datasets.transforms.transform.Transform attribute)
mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method)
matches() (nipy.testing.doctester.NipyDoctest method)
Matlab
matrix_generator() (in module nipy.core.utils.generators)
message (nipy.core.reference.coordinate_map.AxisError attribute)
(nipy.core.reference.coordinate_map.CoordMapMakerError attribute)
(nipy.core.reference.coordinate_system.CoordSysMakerError attribute)
(nipy.core.reference.coordinate_system.CoordinateSystemError attribute)
(nipy.core.reference.spaces.AffineError attribute)
(nipy.core.reference.spaces.AxesError attribute)
(nipy.core.reference.spaces.SpaceError attribute)
(nipy.core.reference.spaces.SpaceTypeError attribute)
(nipy.io.nifti_ref.NiftiError attribute)
(nipy.labs.datasets.transforms.transform.CompositionError attribute)
metadata (nipy.core.image.image.Image attribute)
(nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_field.VolumeField attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
mlab_tempfile() (in module nipy.interfaces.matlab)
MultiSubjectParcellation (class in nipy.labs.spatial_models.parcellation)

N

name (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
(nipy.testing.doctester.NipyDoctest attribute)
ndim (nipy.core.reference.coordinate_system.CoordinateSystem attribute)
ndim() (nipy.core.image.image.Image method)
ndims (nipy.core.reference.coordinate_map.AffineTransform attribute)
(nipy.core.reference.coordinate_map.CoordinateMap attribute)
needs_mpl_agg() (in module nipy.testing.decorators)
needs_review() (in module nipy.testing.decorators)
next() (nipy.core.image.image_list.ImageList method)
(nipy.modalities.fmri.fmri.FmriImageList method)
nifti2nipy() (in module nipy.io.nifti_ref)
NiftiError (class in nipy.io.nifti_ref)
nipy.core.image.image (module)
nipy.core.image.image_list (module)
nipy.core.image.image_spaces (module)
nipy.core.reference.array_coords (module)
nipy.core.reference.coordinate_map (module)
nipy.core.reference.coordinate_system (module)
nipy.core.reference.slices (module)
nipy.core.reference.spaces (module)
nipy.core.utils.generators (module)
nipy.interfaces.matlab (module)
nipy.interfaces.spm (module)
nipy.io.files (module)
nipy.io.nibcompat (module)
nipy.io.nifti_ref (module)
nipy.labs.datasets.converters (module)
nipy.labs.datasets.transforms.affine_transform (module)
nipy.labs.datasets.transforms.affine_utils (module)
nipy.labs.datasets.transforms.transform (module)
nipy.labs.datasets.volumes.volume_data (module)
nipy.labs.datasets.volumes.volume_field (module)
nipy.labs.datasets.volumes.volume_grid (module)
nipy.labs.datasets.volumes.volume_img (module)
nipy.labs.mask (module)
nipy.labs.spatial_models.parcellation (module)
nipy.labs.spatial_models.structural_bfls (module)
nipy.labs.viz_tools.activation_maps (module)
nipy.labs.viz_tools.anat_cache (module)
nipy.labs.viz_tools.cm (module)
nipy.labs.viz_tools.coord_tools (module)
nipy.labs.viz_tools.maps_3d (module)
nipy.labs.viz_tools.slicers (module)
nipy.labs.viz_tools.test.test_activation_maps (module)
nipy.labs.viz_tools.test.test_cm (module)
nipy.labs.viz_tools.test.test_coord_tools (module)
nipy.labs.viz_tools.test.test_edge_detect (module)
nipy.labs.viz_tools.test.test_slicers (module)
nipy.modalities.fmri.design_matrix (module)
nipy.modalities.fmri.experimental_paradigm (module)
nipy.modalities.fmri.fmri (module)
nipy.modalities.fmri.fmristat.outputters (module)
nipy.modalities.fmri.hemodynamic_models (module)
nipy.pkg_info (module)
nipy.testing.decorators (module)
nipy.testing.doctester (module)
nipy.testing.nosetester (module)
nipy.utils.arrays (module)
nipy.utils.compat3 (module)
nipy.utils.perlpie (module)
nipy.utils.skip_test (module)
nipy.utils.utilities (module)
nipy2nifti() (in module nipy.io.nifti_ref)
NipyDoctest (class in nipy.testing.doctester)
NipyNoseTester (class in nipy.testing.nosetester)
NipyOutputChecker (class in nipy.testing.doctester)
NormalEmpiricalNull (class in nipy.algorithms.statistics.empirical_pvalue)

O

open4csv() (in module nipy.utils.compat3)
options() (nipy.testing.doctester.NipyDoctest method)
orth_axes() (in module nipy.core.reference.coordinate_map)
OrthoSlicer (class in nipy.labs.viz_tools.slicers)
out_check_class (nipy.testing.doctester.NipyDoctest attribute)
output_AR1() (in module nipy.modalities.fmri.fmristat.outputters)
output_difference() (nipy.testing.doctester.NipyOutputChecker method)
output_F() (in module nipy.modalities.fmri.fmristat.outputters)
output_resid() (in module nipy.modalities.fmri.fmristat.outputters)
output_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute)
(nipy.labs.datasets.transforms.transform.Transform attribute)
output_T() (in module nipy.modalities.fmri.fmristat.outputters)

P

Paradigm (class in nipy.modalities.fmri.experimental_paradigm)
parcels() (in module nipy.core.utils.generators)
PCA
perl_dash_pie() (in module nipy.utils.perlpie)
PET
pkg_commit_hash() (in module nipy.pkg_info)
plot() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
plot_anat() (in module nipy.labs.viz_tools.activation_maps)
plot_anat_3d() (in module nipy.labs.viz_tools.maps_3d), [1]
plot_map() (in module nipy.labs.viz_tools.activation_maps), [1]
(nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
plot_map_3d() (in module nipy.labs.viz_tools.maps_3d), [1]
population() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
prepare_imports() (in module nipy.testing.nosetester)
prepare_test_args() (nipy.testing.nosetester.NipyNoseTester method)
prepareTestLoader() (nipy.testing.doctester.NipyDoctest method)
print_extended_help() (in module nipy.utils.perlpie)
product() (in module nipy.core.reference.coordinate_map)
(in module nipy.core.reference.coordinate_system)

R

reference() (nipy.core.image.image.Image method)
register_to() (nipy.core.reference.spaces.XYZSpace method)
RegressionOutput (class in nipy.modalities.fmri.fmristat.outputters)
RegressionOutputList (class in nipy.modalities.fmri.fmristat.outputters)
renamed_axes() (nipy.core.image.image.Image method)
renamed_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
renamed_reference() (nipy.core.image.image.Image method)
reordered_axes() (nipy.core.image.image.Image method)
reordered_domain() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_range() (in module nipy.core.reference.coordinate_map)
(nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
reordered_reference() (nipy.core.image.image.Image method)
replace_inside() (in module nipy.labs.viz_tools.cm)
resampled_to_img() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
roi_prevalence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
rollaxis() (in module nipy.core.image.image)
rollimg() (in module nipy.core.image.image)
round_numbers() (in module nipy.testing.doctester)
run_jobdef() (in module nipy.interfaces.spm)
run_matlab() (in module nipy.interfaces.matlab)
run_matlab_script() (in module nipy.interfaces.matlab)

S

safe_dtype() (in module nipy.core.reference.coordinate_system)
save() (in module nipy.io.files)
(in module nipy.labs.datasets.converters)
scans_for_fname() (in module nipy.interfaces.spm)
scans_for_fnames() (in module nipy.interfaces.spm)
score (nipy.testing.doctester.NipyDoctest attribute)
series_from_mask() (in module nipy.labs.mask)
set_feature() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_individual_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_template_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method)
set_test_context() (nipy.testing.doctester.NipyDoctest method)
shape() (nipy.core.image.image.Image method)
shape_generator() (in module nipy.core.utils.generators)
shifted_domain_origin() (in module nipy.core.reference.coordinate_map)
shifted_range_origin() (in module nipy.core.reference.coordinate_map)
show() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method)
(nipy.modalities.fmri.design_matrix.DesignMatrix method)
show_contrast() (nipy.modalities.fmri.design_matrix.DesignMatrix method)
similar_to() (nipy.core.reference.coordinate_map.AffineTransform method)
(nipy.core.reference.coordinate_map.CoordinateMap method)
(nipy.core.reference.coordinate_system.CoordinateSystem method)
skip_if_running_nose() (in module nipy.utils.skip_test)
slice_generator() (in module nipy.core.utils.generators)
slice_parcels() (in module nipy.core.utils.generators)
SliceMaker (class in nipy.core.image.image)
SpaceError (class in nipy.core.reference.spaces)
SpaceTypeError (class in nipy.core.reference.spaces)
SPM
SPM approach
SPM software
spm_dispersion_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
spm_hrf() (in module nipy.modalities.fmri.hemodynamic_models)
spm_path (nipy.interfaces.spm.SpmInfo attribute)
spm_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models)
spm_ver (nipy.interfaces.spm.SpmInfo attribute)
SpmInfo (class in nipy.interfaces.spm)
strides_from() (in module nipy.utils.arrays)
strip_array_repr() (in module nipy.testing.doctester)
subsample() (in module nipy.core.image.image)
suiteClass (nipy.testing.doctester.NipyDoctest attribute)
surrogate_2d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
surrogate_3d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
surrogate_4d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset)
synchronized_order() (in module nipy.core.image.image)

T

test() (nipy.testing.nosetester.NipyNoseTester method)
test_anat_cache() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_coord_transform_trivial() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_demo_ortho_slicer() (in module nipy.labs.viz_tools.test.test_slicers)
test_demo_plot_map() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_dim_cmap() (in module nipy.labs.viz_tools.test.test_cm)
test_edge_detect() (in module nipy.labs.viz_tools.test.test_edge_detect)
test_fast_abs_percentile() (in module nipy.labs.viz_tools.test.test_edge_detect)
test_find_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_find_maxsep_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools)
test_finder_class (nipy.testing.doctester.NipyDoctest attribute)
test_plot_anat() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_plot_map_empty() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_plot_map_with_auto_cut_coords() (in module nipy.labs.viz_tools.test.test_activation_maps)
test_replace_inside() (in module nipy.labs.viz_tools.test.test_cm)
threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)
threshold_connect_components() (in module nipy.labs.mask)
title() (nipy.labs.viz_tools.slicers.BaseSlicer method)
(nipy.labs.viz_tools.slicers.BaseStackedSlicer method)
(nipy.labs.viz_tools.slicers.OrthoSlicer method)
(nipy.labs.viz_tools.slicers.XSlicer method)
(nipy.labs.viz_tools.slicers.YSlicer method)
(nipy.labs.viz_tools.slicers.ZSlicer method)
to_coordsys_maker() (nipy.core.reference.spaces.XYZSpace method)
to_matrix_vector() (in module nipy.labs.datasets.transforms.affine_utils)
tolist() (nipy.testing.doctester.NipyDoctest method)
TOutput (class in nipy.modalities.fmri.fmristat.outputters)
Transform (class in nipy.labs.datasets.transforms.transform)
transposed_values (nipy.core.reference.array_coords.ArrayCoordMap attribute)

U

uncorrected_threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method)

V

values (nipy.core.reference.array_coords.ArrayCoordMap attribute)
values_in_world() (nipy.labs.datasets.volumes.volume_data.VolumeData method)
(nipy.labs.datasets.volumes.volume_field.VolumeField method), [1]
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid method)
(nipy.labs.datasets.volumes.volume_img.VolumeImg method)
VolumeData (class in nipy.labs.datasets.volumes.volume_data)
VolumeField (class in nipy.labs.datasets.volumes.volume_field)
VolumeGrid (class in nipy.labs.datasets.volumes.volume_grid)
VolumeImg (class in nipy.labs.datasets.volumes.volume_img)
VoxBo
voxel

W

wantFile() (nipy.testing.doctester.NipyDoctest method)
water activation PET
world_space (nipy.labs.datasets.volumes.volume_data.VolumeData attribute)
(nipy.labs.datasets.volumes.volume_field.VolumeField attribute)
(nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute)
(nipy.labs.datasets.volumes.volume_img.VolumeImg attribute)
write_csv() (nipy.modalities.fmri.design_matrix.DesignMatrix method)
write_data() (in module nipy.core.utils.generators)
write_to_csv() (nipy.modalities.fmri.experimental_paradigm.BlockParadigm method)
(nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method)
(nipy.modalities.fmri.experimental_paradigm.Paradigm method)

X

x (nipy.core.reference.spaces.XYZSpace attribute)
x_suffix (nipy.core.reference.spaces.XYZSpace attribute)
xslice() (in module nipy.core.reference.slices)
XSlicer (class in nipy.labs.viz_tools.slicers)
xyz_affine() (in module nipy.core.image.image_spaces)
(in module nipy.core.reference.spaces)
xyz_order() (in module nipy.core.reference.spaces)
xyz_ordered() (nipy.labs.datasets.volumes.volume_img.VolumeImg method)
XYZSpace (class in nipy.core.reference.spaces)

Y

y (nipy.core.reference.spaces.XYZSpace attribute)
y_suffix (nipy.core.reference.spaces.XYZSpace attribute)
yslice() (in module nipy.core.reference.slices)
YSlicer (class in nipy.labs.viz_tools.slicers)

Z

z (nipy.core.reference.spaces.XYZSpace attribute)
z_suffix (nipy.core.reference.spaces.XYZSpace attribute)
zslice() (in module nipy.core.reference.slices)
ZSlicer (class in nipy.labs.viz_tools.slicers)