Index

_

__init__() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.ggmixture.Gamma method) (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.gmm.GridDescriptor method) (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) (nipy.algorithms.fwhm.ReselImage method) (nipy.algorithms.fwhm.Resels method) (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method) (nipy.algorithms.interpolation.ImageInterpolator method) (nipy.algorithms.kernel_smooth.LinearFilter method) (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) (nipy.algorithms.registration.chain_transform.ChainTransform method) (nipy.algorithms.registration.groupwise_registration.FmriRealign4d method) (nipy.algorithms.registration.groupwise_registration.Image4d method) (nipy.algorithms.registration.groupwise_registration.Realign4d method) (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) (nipy.algorithms.registration.groupwise_registration.SpaceRealign method) (nipy.algorithms.registration.groupwise_registration.SpaceTimeRealign method) (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) (nipy.algorithms.registration.polyaffine.PolyAffine method) (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method) (nipy.algorithms.registration.similarity_measures.CorrelationRatio method) (nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method) (nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method) (nipy.algorithms.registration.similarity_measures.MutualInformation method) (nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method) (nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method) (nipy.algorithms.registration.similarity_measures.SimilarityMeasure method) (nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method) (nipy.algorithms.registration.transform.Transform method) (nipy.algorithms.segmentation.brain_segmentation.BrainT1Segmentation method) (nipy.algorithms.segmentation.segmentation.Segmentation method) (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.Factor method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Formula method) (nipy.algorithms.statistics.formula.formulae.RandomEffects method) (nipy.algorithms.statistics.formula.formulae.Term method) (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method) (nipy.algorithms.statistics.models.family.family.Binomial method) (nipy.algorithms.statistics.models.family.family.Family method) (nipy.algorithms.statistics.models.family.family.Gamma method) (nipy.algorithms.statistics.models.family.family.Gaussian method) (nipy.algorithms.statistics.models.family.family.InverseGaussian method) (nipy.algorithms.statistics.models.family.family.Poisson method) (nipy.algorithms.statistics.models.family.links.CDFLink method) (nipy.algorithms.statistics.models.family.links.CLogLog method) (nipy.algorithms.statistics.models.family.links.Link method) (nipy.algorithms.statistics.models.family.links.Log method) (nipy.algorithms.statistics.models.family.links.Logit method) (nipy.algorithms.statistics.models.family.links.Power method) (nipy.algorithms.statistics.models.family.varfuncs.Binomial method) (nipy.algorithms.statistics.models.family.varfuncs.Power method) (nipy.algorithms.statistics.models.family.varfuncs.VarianceFunction method) (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.FContrastResults method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.model.Model method) (nipy.algorithms.statistics.models.model.TContrastResults method) (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) (nipy.algorithms.statistics.models.regression.AREstimator method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.RegressionResults method) (nipy.algorithms.statistics.models.regression.WLSModel method) (nipy.algorithms.statistics.models.utils.StepFunction method) (nipy.algorithms.statistics.rft.ChiBarSquared method) (nipy.algorithms.statistics.rft.ChiSquared method) (nipy.algorithms.statistics.rft.ECcone method) (nipy.algorithms.statistics.rft.ECquasi method) (nipy.algorithms.statistics.rft.fnsum method) (nipy.algorithms.statistics.rft.FStat method) (nipy.algorithms.statistics.rft.Hotelling method) (nipy.algorithms.statistics.rft.IntrinsicVolumes method) (nipy.algorithms.statistics.rft.MultilinearForm method) (nipy.algorithms.statistics.rft.OneSidedF method) (nipy.algorithms.statistics.rft.Roy method) (nipy.algorithms.statistics.rft.TStat method) (nipy.core.image.image.Image method) (nipy.core.image.image.SliceMaker method) (nipy.core.image.image_list.ImageList method) (nipy.core.reference.array_coords.ArrayCoordMap method) (nipy.core.reference.array_coords.Grid method) (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.AxisError method) (nipy.core.reference.coordinate_map.CoordinateMap method) (nipy.core.reference.coordinate_map.CoordMapMaker method) (nipy.core.reference.coordinate_map.CoordMapMakerError method) (nipy.core.reference.coordinate_system.CoordinateSystem method) (nipy.core.reference.coordinate_system.CoordinateSystemError method) (nipy.core.reference.coordinate_system.CoordSysMaker method) (nipy.core.reference.coordinate_system.CoordSysMakerError method) (nipy.core.reference.spaces.AffineError method) (nipy.core.reference.spaces.AxesError method) (nipy.core.reference.spaces.SpaceError method) (nipy.core.reference.spaces.SpaceTypeError method) (nipy.core.reference.spaces.XYZSpace method) (nipy.interfaces.spm.SpmInfo method) (nipy.io.nifti_ref.NiftiError method) (nipy.labs.datasets.transforms.affine_transform.AffineTransform method) (nipy.labs.datasets.transforms.transform.CompositionError method) (nipy.labs.datasets.transforms.transform.Transform method) (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_field.VolumeField method) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) (nipy.labs.glm.glm.contrast method) (nipy.labs.glm.glm.glm method) (nipy.labs.group.permutation_test.permutation_test method) (nipy.labs.group.permutation_test.permutation_test_onesample method) (nipy.labs.group.permutation_test.permutation_test_onesample_graph method) (nipy.labs.group.permutation_test.permutation_test_twosample method) (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.MeshDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method) (nipy.labs.statistical_mapping.LinearModel method) (nipy.labs.viz_tools.slicers.BaseSlicer method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.CutAxes method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) (nipy.modalities.fmri.design_matrix.DesignMatrix method) (nipy.modalities.fmri.experimental_paradigm.BlockParadigm method) (nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method) (nipy.modalities.fmri.experimental_paradigm.Paradigm method) (nipy.modalities.fmri.fmri.FmriImageList method) (nipy.modalities.fmri.fmristat.model.AR1 method) (nipy.modalities.fmri.fmristat.model.ModelOutputImage method) (nipy.modalities.fmri.fmristat.model.OLS method) (nipy.modalities.fmri.fmristat.outputters.RegressionOutput method) (nipy.modalities.fmri.fmristat.outputters.RegressionOutputList method) (nipy.modalities.fmri.fmristat.outputters.TOutput method) (nipy.modalities.fmri.glm.Contrast method) (nipy.modalities.fmri.glm.FMRILinearModel method) (nipy.modalities.fmri.glm.GeneralLinearModel method) (nipy.modalities.fmri.spm.model.SecondStage method) (nipy.modalities.fmri.utils.Interp1dNumeric method) (nipy.modalities.fmri.utils.TimeConvolver method) (nipy.utils.VisibleDeprecationWarning method)

A

add_np() (in module nipy.conftest) adjacency() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) adjoint() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) adjust_subsampling() (in module nipy.algorithms.registration.groupwise_registration) aff2euler() (in module nipy.algorithms.registration.scripting) aff2rot_zooms() (in module nipy.algorithms.registration.scripting) Affine (class in nipy.algorithms.registration.affine) affine (nipy.core.reference.coordinate_map.AffineTransform attribute) (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute) (nipy.labs.datasets.volumes.volume_img.VolumeImg attribute) affine() (nipy.algorithms.registration.polyaffine.PolyAffine method) (nipy.core.image.image.Image method) Affine2D (class in nipy.algorithms.registration.affine) affine_img_src() (in module nipy.labs.viz_tools.maps_3d), [1] affine_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute) AffineError (class in nipy.core.reference.spaces) affines() (nipy.algorithms.registration.polyaffine.PolyAffine method) AffineTransform (class in nipy.core.reference.coordinate_map) (class in nipy.labs.datasets.transforms.affine_transform) AFNI AIC() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method) align_to_refscan() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) all_distances() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) alpha_cmap() (in module nipy.labs.viz_tools.cm) annotate() (nipy.labs.viz_tools.slicers.BaseSlicer method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) anti_symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) apart() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) append_io_dim() (in module nipy.core.reference.coordinate_map) apply() (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) (nipy.algorithms.registration.chain_transform.ChainTransform method) (nipy.algorithms.registration.polyaffine.PolyAffine method) (nipy.algorithms.registration.transform.Transform method) apply_affine() (in module nipy.labs.datasets.transforms.affine_utils) approx_gradient() (in module nipy.algorithms.registration.histogram_registration) approx_hessian() (in module nipy.algorithms.registration.histogram_registration) approx_hessian_diag() (in module nipy.algorithms.registration.histogram_registration) AR1 (class in nipy.modalities.fmri.fmristat.model) ar_bias_correct() (in module nipy.algorithms.statistics.models.regression) ar_bias_corrector() (in module nipy.algorithms.statistics.models.regression) ARcomponents() (in module nipy.modalities.fmri.spm.correlation) ARcovariance() (in module nipy.modalities.fmri.spm.correlation) area() (nipy.labs.spatial_models.discrete_domain.MeshDomain method) AREstimator (class in nipy.algorithms.statistics.models.regression) args (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) (nipy.core.reference.coordinate_map.AxisError attribute) (nipy.core.reference.coordinate_map.CoordMapMakerError attribute) (nipy.core.reference.coordinate_system.CoordinateSystemError attribute) (nipy.core.reference.coordinate_system.CoordSysMakerError attribute) (nipy.core.reference.spaces.AffineError attribute) (nipy.core.reference.spaces.AxesError attribute) (nipy.core.reference.spaces.SpaceError attribute) (nipy.core.reference.spaces.SpaceTypeError attribute) (nipy.io.nifti_ref.NiftiError attribute) (nipy.labs.datasets.transforms.transform.CompositionError attribute) (nipy.utils.VisibleDeprecationWarning attribute) args_cnc() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) ARModel (class in nipy.algorithms.statistics.models.regression) array_affine_coord() (in module nipy.labs.spatial_models.discrete_domain) ArrayCoordMap (class in nipy.core.reference.array_coords) as_affine() (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) as_base_exp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method)

as_coeff_Add() (nipy.algorithms.statistics.formula.formulae.Beta method) as_coeff_add() (nipy.algorithms.statistics.formula.formulae.Beta method) as_coeff_Add() (nipy.algorithms.statistics.formula.formulae.FactorTerm method) as_coeff_add() (nipy.algorithms.statistics.formula.formulae.FactorTerm method) as_coeff_Add() (nipy.algorithms.statistics.formula.formulae.Term method) as_coeff_add() (nipy.algorithms.statistics.formula.formulae.Term method) as_coeff_exponent() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.Beta method) as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.Beta method) as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.FactorTerm method) as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.FactorTerm method) as_coeff_Mul() (nipy.algorithms.statistics.formula.formulae.Term method) as_coeff_mul() (nipy.algorithms.statistics.formula.formulae.Term method) as_coefficient() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_coefficients_dict() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_content_primitive() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_dummy() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_expr() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_image() (in module nipy.io.files) as_independent() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_leading_term() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_map() (nipy.core.reference.spaces.XYZSpace method) as_numer_denom() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_ordered_factors() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_ordered_terms() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_poly() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_powers_dict() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_real_imag() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_set() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_terms() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) as_tuple() (nipy.core.reference.spaces.XYZSpace method) as_volume_img() (in module nipy.labs.datasets.converters) (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_field.VolumeField method), [1] (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) as_xyz_image() (in module nipy.core.image.image_spaces) aseries() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) assumptions0 (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) atoms() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) autocrop_img() (in module nipy.labs.viz_tools.maps_3d) average_link_graph() (in module nipy.algorithms.clustering.hierarchical_clustering) average_link_graph_segment() (in module nipy.algorithms.clustering.hierarchical_clustering) average_log_like() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) axes() (nipy.core.image.image.Image method) AxesError (class in nipy.core.reference.spaces) axis0_generator() (in module nipy.modalities.fmri.fmri) AxisError (class in nipy.core.reference.coordinate_map) axmap() (in module nipy.core.reference.coordinate_map)

B

ball_search() (in module nipy.algorithms.statistics.rft) BaseSlicer (class in nipy.labs.viz_tools.slicers) BaseStackedSlicer (class in nipy.labs.viz_tools.slicers) bayes_factor() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) bench_lips1d() (in module nipy.algorithms.statistics.bench.bench_intvol) bench_lips2d() (in module nipy.algorithms.statistics.bench.bench_intvol) bench_lips3d() (in module nipy.algorithms.statistics.bench.bench_intvol) best_fitting_GMM() (in module nipy.algorithms.clustering.gmm) Beta (class in nipy.algorithms.statistics.formula.formulae) BGMM (class in nipy.algorithms.clustering.bgmm) bic() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) BIC() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method) binarize_ppm() (in module nipy.algorithms.segmentation.segmentation)

binary_symbols (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) Binomial (class in nipy.algorithms.statistics.models.family.family) (class in nipy.algorithms.statistics.models.family.varfuncs) binomial() (in module nipy.algorithms.statistics.rft) bipartite_graph_from_adjacency() (in module nipy.algorithms.graph.bipartite_graph) bipartite_graph_from_coo_matrix() (in module nipy.algorithms.graph.bipartite_graph) BipartiteGraph (class in nipy.algorithms.graph.bipartite_graph) block_amplitudes() (in module nipy.modalities.fmri.design) block_design() (in module nipy.modalities.fmri.design) BlockParadigm (class in nipy.modalities.fmri.experimental_paradigm) blocks() (in module nipy.modalities.fmri.utils) BOLD bonferroni() (in module nipy.labs.statistical_mapping) bootstrap_group() (in module nipy.labs.utils.reproducibility_measures) bounding_box() (in module nipy.core.reference.slices) BrainT1Segmentation (class in nipy.algorithms.segmentation.brain_segmentation) BrainVisa BSD build_landmarks() (in module nipy.labs.spatial_models.structural_bfls)

C

c (nipy.algorithms.statistics.rft.ECquasi property) calibrate() (nipy.labs.group.permutation_test.permutation_test method) (nipy.labs.group.permutation_test.permutation_test_onesample method) (nipy.labs.group.permutation_test.permutation_test_onesample_graph method) (nipy.labs.group.permutation_test.permutation_test_twosample method) cancel() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) canonical_variables (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) cast_array() (in module nipy.algorithms.registration.resample) cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) CDFLink (class in nipy.algorithms.statistics.models.family.links) centers() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method) ChainTransform (class in nipy.algorithms.registration.chain_transform) change_exponent() (nipy.algorithms.statistics.rft.ECquasi method) check() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.ggmixture.Gamma method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) (nipy.algorithms.graph.forest.Forest method) (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) check_arrays() (in module nipy.algorithms.statistics.mixed_effects_stat) check_cast_bin8() (in module nipy.algorithms.statistics.utils) check_compatible_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) check_deps() (in module nipy.utils.perlpie) check_feature_matrices() (in module nipy.algorithms.graph.bipartite_graph) check_p_values() (in module nipy.algorithms.statistics.empirical_pvalue) check_type() (in module nipy.algorithms.registration.type_check) check_type_and_shape() (in module nipy.algorithms.registration.type_check) check_x() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) ChiBarSquared (class in nipy.algorithms.statistics.rft) ChiSquared (class in nipy.algorithms.statistics.rft) clamp() (in module nipy.algorithms.registration.histogram_registration) class_key() (nipy.algorithms.statistics.formula.formulae.Beta class method) (nipy.algorithms.statistics.formula.formulae.FactorTerm class method) (nipy.algorithms.statistics.formula.formulae.Term class method) clean() (nipy.algorithms.statistics.models.family.links.CDFLink method) (nipy.algorithms.statistics.models.family.links.CLogLog method) (nipy.algorithms.statistics.models.family.links.Log method) (nipy.algorithms.statistics.models.family.links.Logit method) (nipy.algorithms.statistics.models.family.varfuncs.Binomial method) cliques() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) CLogLog (class in nipy.algorithms.statistics.models.family.links) closing() (nipy.algorithms.graph.field.Field method) cluster_reproducibility() (in module nipy.labs.utils.reproducibility_measures) cluster_stats() (in module nipy.labs.statistical_mapping) cluster_threshold() (in module nipy.labs.utils.reproducibility_measures) co_labelling() (in module nipy.algorithms.clustering.imm) coef (nipy.algorithms.statistics.rft.ECquasi property) coeff() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) coefficients (nipy.algorithms.statistics.rft.ECquasi property) coeffs (nipy.algorithms.statistics.rft.ECquasi property) coefs (nipy.algorithms.statistics.formula.formulae.Factor property) (nipy.algorithms.statistics.formula.formulae.Formula property) (nipy.algorithms.statistics.formula.formulae.RandomEffects property) collect() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) combsimp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) compact_neighb() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) compare() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) compatible() (nipy.algorithms.statistics.rft.ECquasi method) complete_graph() (in module nipy.algorithms.graph.graph) complex() (in module nipy.algorithms.statistics.utils) component_likelihood() (nipy.algorithms.clustering.ggmixture.GGGM method) compose() (in module nipy.core.reference.coordinate_map) (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) (nipy.algorithms.registration.polyaffine.PolyAffine method) (nipy.algorithms.registration.transform.Transform method) composed_with() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method) (nipy.labs.datasets.transforms.transform.Transform method) composed_with_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_field.VolumeField method), [1] (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) CompositionError (class in nipy.labs.datasets.transforms.transform)

compute_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) compute_cluster_stats() (in module nipy.labs.group.permutation_test) compute_landmarks() (in module nipy.labs.spatial_models.bayesian_structural_analysis) compute_leading_term() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) compute_mask() (in module nipy.labs.mask) (in module nipy.labs.utils.mask) compute_mask_files() (in module nipy.labs.mask) (in module nipy.labs.utils.mask) compute_mask_sessions() (in module nipy.labs.mask) (in module nipy.labs.utils.mask) compute_region_stat() (in module nipy.labs.group.permutation_test) compute_regressor() (in module nipy.modalities.fmri.hemodynamic_models) concatenate_graphs() (in module nipy.algorithms.graph.graph) conditional_posterior_proba() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) conf_int() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method) configure_optimizer() (in module nipy.algorithms.registration.optimizer) conjugate() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) conjunction() (in module nipy.labs.utils.reproducibility_measures) connected_components() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) constrained_voronoi() (nipy.algorithms.graph.field.Field method) cont() (nipy.algorithms.statistics.models.glm.Model method) contour_map() (nipy.labs.viz_tools.slicers.BaseSlicer method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) contrast (class in nipy.labs.glm.glm) Contrast (class in nipy.modalities.fmri.glm) contrast() (nipy.labs.glm.glm.glm method) (nipy.labs.statistical_mapping.LinearModel method) (nipy.modalities.fmri.glm.FMRILinearModel method) (nipy.modalities.fmri.glm.GeneralLinearModel method) contrast_from_cols_or_rows() (in module nipy.algorithms.statistics.formula.formulae) convert() (nipy.algorithms.segmentation.brain_segmentation.BrainT1Segmentation method) convolve() (nipy.modalities.fmri.utils.TimeConvolver method) convolve_functions() (in module nipy.modalities.fmri.utils) coord_bsa() (in module nipy.labs.utils.reproducibility_measures) coord_dtype (nipy.core.reference.coordinate_system.CoordinateSystem attribute) coord_names (nipy.core.reference.coordinate_system.CoordinateSystem attribute) coord_sys_klass (nipy.core.reference.coordinate_system.CoordSysMaker attribute) coord_transform() (in module nipy.labs.viz_tools.coord_tools) CoordinateMap (class in nipy.core.reference.coordinate_map) CoordinateSystem (class in nipy.core.reference.coordinate_system) CoordinateSystemError (class in nipy.core.reference.coordinate_system) coordmap (nipy.core.image.image.Image attribute) CoordMapMaker (class in nipy.core.reference.coordinate_map) CoordMapMakerError (class in nipy.core.reference.coordinate_map) CoordSysMaker (class in nipy.core.reference.coordinate_system) CoordSysMakerError (class in nipy.core.reference.coordinate_system) copy() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) correlation2loglikelihood() (in module nipy.algorithms.registration.similarity_measures) CorrelationCoefficient (class in nipy.algorithms.registration.similarity_measures) CorrelationRatio (class in nipy.algorithms.registration.similarity_measures) CorrelationRatioL1 (class in nipy.algorithms.registration.similarity_measures) could_extract_minus_sign() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) count() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) count_ops() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) cov() (nipy.algorithms.statistics.formula.formulae.RandomEffects method) cross_eps() (in module nipy.algorithms.graph.bipartite_graph) cross_knn() (in module nipy.algorithms.graph.bipartite_graph) cross_validated_update() (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) cube_with_strides_center() (in module nipy.algorithms.statistics.utils) custom_watershed() (nipy.algorithms.graph.field.Field method) cut_redundancies() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) CutAxes (class in nipy.labs.viz_tools.slicers)

D

data_generator() (in module nipy.core.utils.generators) data_scaling() (in module nipy.modalities.fmri.glm) dct_ii_basis() (in module nipy.modalities.fmri.realfuncs) dct_ii_cut_basis() (in module nipy.modalities.fmri.realfuncs) ddspmt() (in module nipy.modalities.fmri.hrf) decompose2d() (in module nipy.algorithms.statistics.utils) decompose3d() (in module nipy.algorithms.statistics.utils) def_model (nipy.labs.statistical_mapping.LinearModel attribute) def_niter (nipy.labs.statistical_mapping.LinearModel attribute) default_assumptions (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) define() (in module nipy.algorithms.statistics.formula.formulae) (in module nipy.modalities.fmri.utils) define_graph_attributes() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) degrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) demo_ortho_slicer() (in module nipy.labs.viz_tools.slicers) demo_plot_map() (in module nipy.labs.viz_tools.activation_maps) demo_plot_map_3d() (in module nipy.labs.viz_tools.maps_3d) denom_poly() (nipy.algorithms.statistics.rft.ECquasi method) density() (nipy.algorithms.statistics.rft.ChiBarSquared method) (nipy.algorithms.statistics.rft.ChiSquared method) (nipy.algorithms.statistics.rft.ECcone method) (nipy.algorithms.statistics.rft.FStat method) (nipy.algorithms.statistics.rft.Hotelling method) (nipy.algorithms.statistics.rft.MultilinearForm method) (nipy.algorithms.statistics.rft.OneSidedF method) (nipy.algorithms.statistics.rft.Roy method) (nipy.algorithms.statistics.rft.TStat method) density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) depth_from_leaves() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) deriv() (nipy.algorithms.statistics.models.family.links.CDFLink method) (nipy.algorithms.statistics.models.family.links.CLogLog method) (nipy.algorithms.statistics.models.family.links.Link method) (nipy.algorithms.statistics.models.family.links.Log method) (nipy.algorithms.statistics.models.family.links.Logit method) (nipy.algorithms.statistics.models.family.links.Power method) (nipy.algorithms.statistics.rft.ECquasi method) design() (nipy.algorithms.statistics.formula.formulae.Factor method) (nipy.algorithms.statistics.formula.formulae.Formula method) (nipy.algorithms.statistics.formula.formulae.RandomEffects method) design_expr (nipy.algorithms.statistics.formula.formulae.Factor property) (nipy.algorithms.statistics.formula.formulae.Formula property) (nipy.algorithms.statistics.formula.formulae.RandomEffects property) DesignMatrix (class in nipy.modalities.fmri.design_matrix) detsh() (in module nipy.algorithms.clustering.bgmm) deviance() (nipy.algorithms.statistics.models.family.family.Binomial method) (nipy.algorithms.statistics.models.family.family.Family method) (nipy.algorithms.statistics.models.family.family.Gamma method) (nipy.algorithms.statistics.models.family.family.Gaussian method) (nipy.algorithms.statistics.models.family.family.InverseGaussian method) (nipy.algorithms.statistics.models.family.family.Poisson method) (nipy.algorithms.statistics.models.glm.Model method) devresid() (nipy.algorithms.statistics.models.family.family.Binomial method) (nipy.algorithms.statistics.models.family.family.Family method) (nipy.algorithms.statistics.models.family.family.Gamma method) (nipy.algorithms.statistics.models.family.family.Gaussian method) (nipy.algorithms.statistics.models.family.family.InverseGaussian method) (nipy.algorithms.statistics.models.family.family.Poisson method)

diagnose() (in module nipy.algorithms.diagnostics.commands) diff() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) diffusion() (nipy.algorithms.graph.field.Field method) dijkstra() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) dilation() (nipy.algorithms.graph.field.Field method) dim_cmap() (in module nipy.labs.viz_tools.cm) dir() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) dirichlet_eval() (in module nipy.algorithms.clustering.bgmm) DiscreteDomain (class in nipy.labs.spatial_models.discrete_domain) DiscreteParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures) dist2loss() (in module nipy.algorithms.registration.similarity_measures) dkl_dirichlet() (in module nipy.algorithms.clustering.bgmm) dkl_gaussian() (in module nipy.algorithms.clustering.bgmm) dkl_wishart() (in module nipy.algorithms.clustering.bgmm) dmtx_from_csv() (in module nipy.modalities.fmri.design_matrix) dmtx_light() (in module nipy.modalities.fmri.design_matrix) do_3d_to_4d() (in module nipy.cli.img3dto4d) do_cut() (nipy.labs.viz_tools.slicers.CutAxes method) doit() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) domain_from_binary_array() (in module nipy.labs.spatial_models.discrete_domain) domain_from_image() (in module nipy.labs.spatial_models.discrete_domain) domain_from_mesh() (in module nipy.labs.spatial_models.discrete_domain) draw_cross() (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) draw_cut() (nipy.labs.viz_tools.slicers.CutAxes method) draw_left_right() (nipy.labs.viz_tools.slicers.CutAxes method) draw_position() (nipy.labs.viz_tools.slicers.CutAxes method) draw_samples() (in module nipy.labs.utils.reproducibility_measures) drop_io_dim() (in module nipy.core.reference.coordinate_map) dspmt() (in module nipy.modalities.fmri.hrf) DTI dtype (nipy.algorithms.statistics.formula.formulae.Factor property) (nipy.algorithms.statistics.formula.formulae.Formula property) (nipy.algorithms.statistics.formula.formulae.RandomEffects property) (nipy.core.reference.coordinate_system.CoordinateSystem attribute) (nipy.modalities.fmri.utils.Interp1dNumeric attribute) dummy_eq() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) dummy_index (nipy.algorithms.statistics.formula.formulae.Beta attribute) dump() (nipy.labs.statistical_mapping.LinearModel method) dump_results() (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method) DWI

E

ECcone (class in nipy.algorithms.statistics.rft) ECDF() (in module nipy.algorithms.statistics.models.utils) ECquasi (class in nipy.algorithms.statistics.rft) edge_map() (nipy.labs.viz_tools.slicers.BaseSlicer method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) EEGlab eps_nn() (in module nipy.algorithms.graph.graph) equals() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) equivalent() (in module nipy.core.reference.coordinate_map) erosion() (nipy.algorithms.graph.field.Field method) Estep() (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) estimate() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.ggmixture.Gamma method) (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) (nipy.algorithms.registration.groupwise_registration.FmriRealign4d method) (nipy.algorithms.registration.groupwise_registration.Realign4d method) (nipy.algorithms.registration.groupwise_registration.SpaceRealign method) (nipy.algorithms.registration.groupwise_registration.SpaceTimeRealign method) estimate_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) estimate_mean() (in module nipy.algorithms.statistics.onesample) estimate_means() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) estimate_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) estimate_pooled_covariance() (in module nipy.modalities.fmri.spm.model) estimate_robust_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture) estimate_scale() (nipy.algorithms.statistics.models.glm.Model method) estimate_varatio() (in module nipy.algorithms.statistics.onesample) estimate_weights() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method)

estimateAR() (in module nipy.modalities.fmri.fmristat.model) euclidean_distance() (in module nipy.algorithms.utils.fast_distance) eval() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) eval_gradient() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) eval_hessian() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) evalf() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) evaluate() (nipy.algorithms.interpolation.ImageInterpolator method) event_design() (in module nipy.modalities.fmri.design) EventRelatedParadigm (class in nipy.modalities.fmri.experimental_paradigm) events() (in module nipy.modalities.fmri.utils) evidence() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) example_cv_nonoise() (in module nipy.algorithms.clustering.von_mises_fisher_mixture) example_noisy() (in module nipy.algorithms.clustering.von_mises_fisher_mixture) execute() (nipy.modalities.fmri.fmristat.model.AR1 method) (nipy.modalities.fmri.fmristat.model.OLS method) (nipy.modalities.fmri.spm.model.SecondStage method) expand() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) explore() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) expr_free_symbols (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) extract_additively() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) extract_branch_factor() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) extract_clusters_from_diam() (in module nipy.labs.group.permutation_test) extract_clusters_from_graph() (in module nipy.labs.group.permutation_test) extract_clusters_from_thresh() (in module nipy.labs.group.permutation_test) extract_multiplicatively() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method)

F

f_generator() (in module nipy.core.utils.generators) F_overall() (nipy.algorithms.statistics.models.regression.RegressionResults method) Factor (class in nipy.algorithms.statistics.formula.formulae) factor() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) FactorTerm (class in nipy.algorithms.statistics.formula.formulae) Family (class in nipy.algorithms.statistics.models.family.family) Fcontrast() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method) FContrastResults (class in nipy.algorithms.statistics.models.model) fdr() (in module nipy.algorithms.statistics.empirical_pvalue) (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] fdr_threshold() (in module nipy.algorithms.statistics.empirical_pvalue) fdrcurve() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] feature_to_voxel_map() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) Field (class in nipy.algorithms.graph.field) field_from_coo_matrix_and_data() (in module nipy.algorithms.graph.field) field_from_graph_and_data() (in module nipy.algorithms.graph.field) fill_value (nipy.modalities.fmri.utils.Interp1dNumeric property) find() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) find_cut_coords() (in module nipy.labs.viz_tools.coord_tools) (nipy.labs.viz_tools.slicers.BaseSlicer static method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer class method) (nipy.labs.viz_tools.slicers.OrthoSlicer static method) (nipy.labs.viz_tools.slicers.XSlicer class method) (nipy.labs.viz_tools.slicers.YSlicer class method) (nipy.labs.viz_tools.slicers.ZSlicer class method) find_maxsep_cut_coords() (in module nipy.labs.viz_tools.coord_tools) find_mni_template() (in module nipy.labs.viz_tools.anat_cache) fit() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method) (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.model.Model method) (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) (nipy.labs.glm.glm.glm method) (nipy.modalities.fmri.glm.FMRILinearModel method) (nipy.modalities.fmri.glm.GeneralLinearModel method) fitted() (nipy.algorithms.statistics.models.family.family.Binomial method) (nipy.algorithms.statistics.models.family.family.Family method) (nipy.algorithms.statistics.models.family.family.Gamma method) (nipy.algorithms.statistics.models.family.family.Gaussian method) (nipy.algorithms.statistics.models.family.family.InverseGaussian method) (nipy.algorithms.statistics.models.family.family.Poisson method) fixed_parcellation() (in module nipy.labs.spatial_models.parcel_io) floyd() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) fltcols() (in module nipy.interfaces.spm) Fmask() (in module nipy.modalities.fmri.spm.model) fmin_steepest() (in module nipy.algorithms.optimize) FMRI FmriImageList (class in nipy.modalities.fmri.fmri) FMRILinearModel (class in nipy.modalities.fmri.glm)

FmriRealign4d (class in nipy.algorithms.registration.groupwise_registration) fname_presuffix() (in module nipy.interfaces.spm) fnames_presuffix() (in module nipy.interfaces.spm) fnsum (class in nipy.algorithms.statistics.rft) Forest (class in nipy.algorithms.graph.forest) Formula (class in nipy.algorithms.statistics.formula.formulae) formula (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) fourier_basis() (in module nipy.modalities.fmri.design) (in module nipy.modalities.fmri.utils) fourier_series() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) fps() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) free_data() (nipy.algorithms.registration.groupwise_registration.Image4d method) free_energy() (nipy.algorithms.segmentation.segmentation.Segmentation method) free_symbols (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) from_3d_grid() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) from_image() (nipy.core.image.image.Image class method) (nipy.core.image.image_list.ImageList class method) (nipy.modalities.fmri.fmri.FmriImageList class method) from_matrix44() (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) from_matrix_vector() (in module nipy.labs.datasets.transforms.affine_utils) from_params() (nipy.core.reference.coordinate_map.AffineTransform static method) from_shape() (nipy.core.reference.array_coords.ArrayCoordMap static method) from_start_step() (nipy.core.reference.coordinate_map.AffineTransform static method) fromarray() (in module nipy.core.image.image) fromcol() (nipy.algorithms.statistics.formula.formulae.Factor static method) fromiter() (nipy.algorithms.statistics.formula.formulae.Beta class method) (nipy.algorithms.statistics.formula.formulae.FactorTerm class method) (nipy.algorithms.statistics.formula.formulae.Term class method) fromrec() (nipy.algorithms.statistics.formula.formulae.Factor static method) (nipy.algorithms.statistics.formula.formulae.Formula static method) (nipy.algorithms.statistics.formula.formulae.RandomEffects static method) FSL FStat (class in nipy.algorithms.statistics.rft) fttest() (in module nipy.labs.utils.reproducibility_measures) full_rank() (in module nipy.algorithms.utils.matrices) func (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) function (nipy.core.reference.coordinate_map.CoordinateMap attribute) function_domain (nipy.core.reference.coordinate_map.AffineTransform attribute) (nipy.core.reference.coordinate_map.CoordinateMap attribute) function_range (nipy.core.reference.coordinate_map.AffineTransform attribute) (nipy.core.reference.coordinate_map.CoordinateMap attribute) fusion() (in module nipy.algorithms.clustering.hierarchical_clustering) fwhm2resel() (nipy.algorithms.fwhm.ReselImage method) (nipy.algorithms.fwhm.Resels method) fwhm2sigma() (in module nipy.algorithms.kernel_smooth)

G

Gamma (class in nipy.algorithms.clustering.ggmixture) (class in nipy.algorithms.statistics.models.family.family) gamma_expr() (in module nipy.modalities.fmri.hrf) gamma_gaussian_fit() (in module nipy.algorithms.statistics.empirical_pvalue) gamma_params() (in module nipy.modalities.fmri.hrf) gammasimp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) Gaussian (class in nipy.algorithms.statistics.models.family.family) gaussian_fdr() (in module nipy.algorithms.statistics.empirical_pvalue) gaussian_fdr_threshold() (in module nipy.algorithms.statistics.empirical_pvalue) GeneralLinearModel (class in nipy.modalities.fmri.glm) generate_data() (in module nipy.algorithms.statistics.mixed_effects_stat) generate_normals() (in module nipy.algorithms.clustering.bgmm) generate_output() (in module nipy.modalities.fmri.fmristat.model) generate_perm() (in module nipy.algorithms.clustering.bgmm) generate_Wishart() (in module nipy.algorithms.clustering.bgmm) generic_maker (nipy.core.reference.coordinate_map.CoordMapMaker attribute) geodesic_kmeans() (nipy.algorithms.graph.field.Field method) get_3d_peaks() (in module nipy.labs.statistical_mapping) get_affine() (in module nipy.io.nibcompat) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) get_beta() (nipy.modalities.fmri.glm.GeneralLinearModel method) get_bounds() (in module nipy.labs.datasets.transforms.affine_utils) get_children() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) get_cluster_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures) get_coord() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) get_dataobj() (in module nipy.io.nibcompat) get_descendants() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) get_E() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) get_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) get_fdata() (nipy.algorithms.registration.groupwise_registration.Image4d method) (nipy.core.image.image.Image method) (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) get_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) get_field() (nipy.algorithms.graph.field.Field method) get_header() (in module nipy.io.nibcompat) get_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) get_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) get_inverse() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method) (nipy.labs.datasets.transforms.transform.Transform method) get_leaves_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method) get_list_data() (nipy.core.image.image_list.ImageList method) (nipy.modalities.fmri.fmri.FmriImageList method) get_local_maxima() (nipy.algorithms.graph.field.Field method) get_local_volume() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) get_logL() (nipy.modalities.fmri.glm.GeneralLinearModel method) get_mask_bounds() (in module nipy.labs.viz_tools.coord_tools) get_mse() (nipy.modalities.fmri.glm.GeneralLinearModel method)

get_object_bounds() (nipy.labs.viz_tools.slicers.CutAxes method) get_parents() (nipy.labs.spatial_models.hroi.HierarchicalROI method) get_peak_position_from_thresholded_map() (in module nipy.labs.utils.reproducibility_measures) get_pkg_info() (in module nipy.pkg_info) get_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) get_shape() (nipy.algorithms.registration.groupwise_registration.Image4d method) get_size() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) get_term() (nipy.algorithms.statistics.formula.formulae.Factor method) get_transform() (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_field.VolumeField method) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) get_unscaled_data() (in module nipy.io.nibcompat) get_V() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) get_vertices() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) get_volume() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) get_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) get_world_coords() (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) get_world_cs() (in module nipy.core.reference.spaces) getn() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) getO() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) getomega() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) getparams() (in module nipy.algorithms.statistics.formula.formulae) getterms() (in module nipy.algorithms.statistics.formula.formulae) getZ() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) GGGM (class in nipy.algorithms.clustering.ggmixture) GGM (class in nipy.algorithms.clustering.ggmixture) glm (class in nipy.labs.glm.glm) glover_hrf() (in module nipy.modalities.fmri.hemodynamic_models) glover_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models) GLSModel (class in nipy.algorithms.statistics.models.regression) GMM (class in nipy.algorithms.clustering.gmm) GPL Graph (class in nipy.algorithms.graph.graph) graph_3d_grid() (in module nipy.algorithms.graph.graph) Grid (class in nipy.core.reference.array_coords) grid_domain_from_binary_array() (in module nipy.labs.spatial_models.discrete_domain) grid_domain_from_image() (in module nipy.labs.spatial_models.discrete_domain) grid_domain_from_shape() (in module nipy.labs.spatial_models.discrete_domain) GridDescriptor (class in nipy.algorithms.clustering.gmm) group_reproducibility_metrics() (in module nipy.labs.utils.reproducibility_measures) guess_priors() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) guess_regularizing() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) guess_slice_axis_and_direction() (in module nipy.algorithms.registration.groupwise_registration)

H

has() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) has_free() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) has_intercept() (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) has_xfree() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method)

header (nipy.core.image.image.Image property) height_threshold() (nipy.labs.group.permutation_test.permutation_test method) (nipy.labs.group.permutation_test.permutation_test_onesample method) (nipy.labs.group.permutation_test.permutation_test_onesample_graph method) (nipy.labs.group.permutation_test.permutation_test_twosample method) HierarchicalROI (class in nipy.labs.spatial_models.hroi) highest_neighbor() (nipy.algorithms.graph.field.Field method) histo_repro() (in module nipy.labs.utils.reproducibility_measures) HistogramRegistration (class in nipy.algorithms.registration.histogram_registration) Hotelling (class in nipy.algorithms.statistics.rft) hparcel() (in module nipy.labs.spatial_models.hierarchical_parcellation) hroi_agglomeration() (in module nipy.labs.spatial_models.hroi) HROI_as_discrete_domain_blobs() (in module nipy.labs.spatial_models.hroi) HROI_from_watershed() (in module nipy.labs.spatial_models.hroi)

I

ICA ideal_spacing() (in module nipy.algorithms.registration.histogram_registration) identity() (nipy.core.reference.coordinate_map.AffineTransform static method) idx_affine_coord() (in module nipy.labs.spatial_models.discrete_domain) if_datasource() (in module nipy.testing.decorators) if_example_data() (in module nipy.testing.decorators) if_templates() (in module nipy.testing.decorators) Image (class in nipy.core.image.image) Image4d (class in nipy.algorithms.registration.groupwise_registration) ImageInterpolator (class in nipy.algorithms.interpolation) ImageList (class in nipy.core.image.image_list) IMM (class in nipy.algorithms.clustering.imm) in_tmp_path() (in module nipy.conftest) index() (nipy.core.reference.coordinate_system.CoordinateSystem method) information() (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) init() (nipy.algorithms.clustering.ggmixture.GGGM method) init_fdr() (nipy.algorithms.clustering.ggmixture.GGGM method) init_instant_motion() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) init_with_figure() (nipy.labs.viz_tools.slicers.BaseSlicer class method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer class method) (nipy.labs.viz_tools.slicers.OrthoSlicer class method) (nipy.labs.viz_tools.slicers.XSlicer class method) (nipy.labs.viz_tools.slicers.YSlicer class method) (nipy.labs.viz_tools.slicers.ZSlicer class method) initialize() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) (nipy.algorithms.statistics.models.family.links.CDFLink method) (nipy.algorithms.statistics.models.family.links.CLogLog method) (nipy.algorithms.statistics.models.family.links.Link method) (nipy.algorithms.statistics.models.family.links.Log method) (nipy.algorithms.statistics.models.family.links.Logit method) (nipy.algorithms.statistics.models.family.links.Power method) (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.model.Model method) (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) initialize_and_estimate() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) input_axis_index() (in module nipy.core.reference.coordinate_map) input_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute) (nipy.labs.datasets.transforms.transform.Transform attribute) integ() (nipy.algorithms.statistics.rft.ChiBarSquared method) (nipy.algorithms.statistics.rft.ChiSquared method) (nipy.algorithms.statistics.rft.ECcone method) (nipy.algorithms.statistics.rft.ECquasi method) (nipy.algorithms.statistics.rft.FStat method) (nipy.algorithms.statistics.rft.Hotelling method) (nipy.algorithms.statistics.rft.MultilinearForm method) (nipy.algorithms.statistics.rft.OneSidedF method) (nipy.algorithms.statistics.rft.Roy method) (nipy.algorithms.statistics.rft.TStat method) integrate() (nipy.algorithms.fwhm.ReselImage method) (nipy.algorithms.fwhm.Resels method) (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) interp (nipy.algorithms.registration.histogram_registration.HistogramRegistration property) interp() (in module nipy.modalities.fmri.utils) Interp1dNumeric (class in nipy.modalities.fmri.utils) interp_slice_times() (in module nipy.algorithms.registration.groupwise_registration) interpolation (nipy.labs.datasets.volumes.volume_data.VolumeData attribute) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute) (nipy.labs.datasets.volumes.volume_img.VolumeImg attribute) intersect_masks() (in module nipy.labs.mask) IntrinsicVolumes (class in nipy.algorithms.statistics.rft) inv() (nipy.algorithms.registration.affine.Affine method) (nipy.algorithms.registration.affine.Affine2D method) (nipy.algorithms.registration.affine.Rigid method) (nipy.algorithms.registration.affine.Rigid2D method) (nipy.algorithms.registration.affine.Similarity method) (nipy.algorithms.registration.affine.Similarity2D method) inverse() (nipy.algorithms.statistics.models.family.links.CDFLink method) (nipy.algorithms.statistics.models.family.links.CLogLog method) (nipy.algorithms.statistics.models.family.links.Link method) (nipy.algorithms.statistics.models.family.links.Log method) (nipy.algorithms.statistics.models.family.links.Logit method) (nipy.algorithms.statistics.models.family.links.Power method) (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.CoordinateMap method) inverse_affine() (in module nipy.algorithms.registration.affine) inverse_function (nipy.core.reference.coordinate_map.CoordinateMap attribute) inverse_mapping (nipy.labs.datasets.transforms.transform.Transform attribute) inverse_mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method) InverseGaussian (class in nipy.algorithms.statistics.models.family.family) invert() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) invertR() (in module nipy.modalities.fmri.fmristat.invert) io_axis_indices() (in module nipy.core.reference.coordinate_map) is_Add (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_algebraic (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_algebraic_expr() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) is_AlgebraicNumber (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_antihermitian (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Atom (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Boolean (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_commutative (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_comparable (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_complex (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_composite (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_connected() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) is_constant() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) is_coordsys() (in module nipy.core.reference.coordinate_system) is_coordsys_maker() (in module nipy.core.reference.coordinate_system) is_Derivative (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_direct (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) is_Dummy (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Equality (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_even (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_extended_negative (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property)

is_extended_nonnegative (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_extended_nonpositive (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_extended_nonzero (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_extended_positive (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_extended_real (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_factor() (in module nipy.algorithms.statistics.formula.formulae) is_factor_term() (in module nipy.algorithms.statistics.formula.formulae) is_finite (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Float (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_formula() (in module nipy.algorithms.statistics.formula.formulae) is_Function (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_hermitian (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_hypergeometric() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) is_image() (in module nipy.core.image.image) is_imaginary (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Indexed (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_infinite (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Integer (nipy.algorithms.statistics.formula.formulae.Beta attribute) is_integer (nipy.algorithms.statistics.formula.formulae.Beta property) is_Integer (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) is_integer (nipy.algorithms.statistics.formula.formulae.FactorTerm property) is_Integer (nipy.algorithms.statistics.formula.formulae.Term attribute) is_integer (nipy.algorithms.statistics.formula.formulae.Term property) is_irrational (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_iterable() (in module nipy.utils.utilities) is_MatAdd (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_MatMul (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Matrix (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_meromorphic() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) is_Mul (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_negative (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_noninteger (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_nonnegative (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_nonpositive (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_nonzero (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Not (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Number (nipy.algorithms.statistics.formula.formulae.Beta attribute) is_number (nipy.algorithms.statistics.formula.formulae.Beta attribute) is_Number (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) is_number (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) is_Number (nipy.algorithms.statistics.formula.formulae.Term attribute) is_number (nipy.algorithms.statistics.formula.formulae.Term attribute) is_NumberSymbol (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_numlike() (in module nipy.utils.utilities) is_odd (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Order (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Piecewise (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Point (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_polar (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Poly (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_polynomial() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) is_positive (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Pow (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_prime (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Rational (nipy.algorithms.statistics.formula.formulae.Beta attribute) is_rational (nipy.algorithms.statistics.formula.formulae.Beta property) is_Rational (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) is_rational (nipy.algorithms.statistics.formula.formulae.FactorTerm property) is_Rational (nipy.algorithms.statistics.formula.formulae.Term attribute) is_rational (nipy.algorithms.statistics.formula.formulae.Term property) is_rational_function() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) is_real (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Relational (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_scalar (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Symbol (nipy.algorithms.statistics.formula.formulae.Beta attribute) is_symbol (nipy.algorithms.statistics.formula.formulae.Beta attribute) is_Symbol (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) is_symbol (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) is_Symbol (nipy.algorithms.statistics.formula.formulae.Term attribute) is_symbol (nipy.algorithms.statistics.formula.formulae.Term attribute) is_term() (in module nipy.algorithms.statistics.formula.formulae) is_transcendental (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) is_Vector (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_Wild (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) is_xyz_affable() (in module nipy.core.image.image_spaces) (in module nipy.core.reference.spaces) is_xyz_space() (in module nipy.core.reference.spaces) is_zero (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) isestimable() (in module nipy.algorithms.statistics.models.regression) isleaf() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) isroot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) iter_axis() (in module nipy.core.image.image) iterative_fit() (nipy.algorithms.statistics.models.regression.ARModel method)

J

join_complexes() (in module nipy.algorithms.statistics.utils)

K

kernel_density() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method) kind (nipy.algorithms.statistics.formula.formulae.Beta property) (nipy.algorithms.statistics.formula.formulae.FactorTerm property) (nipy.algorithms.statistics.formula.formulae.Term property) kmeans() (in module nipy.algorithms.clustering.utils)

knn() (in module nipy.algorithms.graph.graph) known_space() (in module nipy.core.reference.spaces) kruskal() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method)

L

lambdify_t() (in module nipy.modalities.fmri.utils) LandmarkRegions (class in nipy.labs.spatial_models.structural_bfls) largest_cc() (in module nipy.labs.mask) leadterm() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) learn() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] leaves_of_a_subtree() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) left_compose() (nipy.algorithms.registration.polyaffine.PolyAffine method) left_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) LGPL like_from_data() (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) likelihood() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) likelihood_under_the_prior() (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) LikelihoodModel (class in nipy.algorithms.statistics.models.model) LikelihoodModelResults (class in nipy.algorithms.statistics.models.model) lil_cc() (in module nipy.algorithms.graph.graph) limit() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) linear_interp() (in module nipy.modalities.fmri.utils) linear_model_fit() (in module nipy.labs.statistical_mapping) LinearFilter (class in nipy.algorithms.kernel_smooth) LinearModel (class in nipy.labs.statistical_mapping) Link (class in nipy.algorithms.statistics.models.family.links) link (nipy.algorithms.statistics.models.family.family.Binomial property) (nipy.algorithms.statistics.models.family.family.Family property) (nipy.algorithms.statistics.models.family.family.Gamma property) (nipy.algorithms.statistics.models.family.family.Gaussian property) (nipy.algorithms.statistics.models.family.family.InverseGaussian property) (nipy.algorithms.statistics.models.family.family.Poisson property)

links (nipy.algorithms.statistics.models.family.family.Binomial attribute) (nipy.algorithms.statistics.models.family.family.Family attribute) (nipy.algorithms.statistics.models.family.family.Gamma attribute) (nipy.algorithms.statistics.models.family.family.Gaussian attribute) (nipy.algorithms.statistics.models.family.family.InverseGaussian attribute) (nipy.algorithms.statistics.models.family.family.Poisson attribute) list_of_neighbors() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) list_of_subtrees() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) load() (in module nipy.io.files) (in module nipy.labs.glm.glm) load_paradigm_from_csv_file() (in module nipy.modalities.fmri.experimental_paradigm) local_maxima() (nipy.algorithms.graph.field.Field method) Log (class in nipy.algorithms.statistics.models.family.links) log_density_per_component() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) log_external_field() (nipy.algorithms.segmentation.segmentation.Segmentation method) log_like() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method) log_weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) Logit (class in nipy.algorithms.statistics.models.family.links) logL() (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.RegressionResults method) (nipy.algorithms.statistics.models.regression.WLSModel method) loss() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method) (nipy.algorithms.registration.similarity_measures.CorrelationRatio method) (nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method) (nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method) (nipy.algorithms.registration.similarity_measures.MutualInformation method) (nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method) (nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method) (nipy.algorithms.registration.similarity_measures.SimilarityMeasure method) (nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method) lseries() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method)

M

m2screenshot() (in module nipy.labs.viz_tools.maps_3d) mad() (in module nipy.algorithms.statistics.models.utils) main() (in module nipy.algorithms.clustering.imm) (in module nipy.cli.diagnose) (in module nipy.cli.img3dto4d) (in module nipy.cli.img4dto3d) (in module nipy.cli.realign4d) (in module nipy.cli.tsdiffana) (in module nipy.utils.perlpie) main_cc() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) main_effect (nipy.algorithms.statistics.formula.formulae.Factor property) make_affine() (nipy.core.reference.coordinate_map.CoordMapMaker method) make_bsa_image() (in module nipy.labs.spatial_models.bsa_io) make_cmap() (nipy.core.reference.coordinate_map.CoordMapMaker method) make_dmtx() (in module nipy.modalities.fmri.design_matrix) make_dummy() (in module nipy.algorithms.statistics.formula.formulae) make_feature() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) make_feature_from_image() (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) make_forest() (nipy.labs.spatial_models.hroi.HierarchicalROI method) make_graph() (nipy.labs.spatial_models.hroi.HierarchicalROI method) make_grid() (in module nipy.algorithms.registration.groupwise_registration) (nipy.algorithms.clustering.gmm.GridDescriptor method) make_hroi_from_subdomain() (in module nipy.labs.spatial_models.hroi) make_job() (in module nipy.interfaces.spm) make_label_dec() (in module nipy.testing.decorators) make_recarray() (in module nipy.algorithms.statistics.formula.formulae) make_xyz_image() (in module nipy.core.image.image_spaces) map() (nipy.algorithms.segmentation.segmentation.Segmentation method) map_from_ppm() (in module nipy.algorithms.segmentation.segmentation) map_label() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method) map_reproducibility() (in module nipy.labs.utils.reproducibility_measures) mapping (nipy.labs.datasets.transforms.transform.Transform attribute) mapping() (nipy.labs.datasets.transforms.affine_transform.AffineTransform method) mask() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) mask_parcellation() (in module nipy.labs.spatial_models.parcel_io) match() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) matches() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) Matlab matrix_generator() (in module nipy.core.utils.generators) matrix_rank() (in module nipy.algorithms.utils.matrices) max_dist() (in module nipy.labs.group.permutation_test) mean (nipy.algorithms.statistics.formula.formulae.Factor property) (nipy.algorithms.statistics.formula.formulae.Formula property) (nipy.algorithms.statistics.formula.formulae.RandomEffects property) merge_ascending() (nipy.labs.spatial_models.hroi.HierarchicalROI method) merge_descending() (nipy.labs.spatial_models.hroi.HierarchicalROI method) merge_simple_branches() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) MeshDomain (class in nipy.labs.spatial_models.discrete_domain) metadata (nipy.core.image.image.Image attribute) (nipy.labs.datasets.volumes.volume_data.VolumeData attribute) (nipy.labs.datasets.volumes.volume_field.VolumeField attribute) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute) (nipy.labs.datasets.volumes.volume_img.VolumeImg attribute) mfx_stat() (in module nipy.algorithms.statistics.mixed_effects_stat) mfx_ttest() (in module nipy.labs.utils.reproducibility_measures) MixedEffectsModel (class in nipy.algorithms.statistics.mixed_effects_stat) MixedIMM (class in nipy.algorithms.clustering.imm) mixture_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) mixture_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) mlab_tempfile() (in module nipy.interfaces.matlab) mode (nipy.algorithms.interpolation.ImageInterpolator property) Model (class in nipy.algorithms.statistics.models.glm) (class in nipy.algorithms.statistics.models.model) model_generator() (in module nipy.modalities.fmri.fmristat.model) ModelOutputImage (class in nipy.modalities.fmri.fmristat.model) module nipy.algorithms.clustering.bgmm nipy.algorithms.clustering.ggmixture nipy.algorithms.clustering.gmm nipy.algorithms.clustering.hierarchical_clustering nipy.algorithms.clustering.imm nipy.algorithms.clustering.utils nipy.algorithms.clustering.von_mises_fisher_mixture nipy.algorithms.diagnostics.commands nipy.algorithms.diagnostics.screens nipy.algorithms.diagnostics.timediff nipy.algorithms.diagnostics.tsdiffplot nipy.algorithms.fwhm nipy.algorithms.graph.bipartite_graph nipy.algorithms.graph.field nipy.algorithms.graph.forest nipy.algorithms.graph.graph nipy.algorithms.group.parcel_analysis nipy.algorithms.interpolation nipy.algorithms.kernel_smooth nipy.algorithms.optimize nipy.algorithms.registration.affine nipy.algorithms.registration.chain_transform nipy.algorithms.registration.groupwise_registration nipy.algorithms.registration.histogram_registration nipy.algorithms.registration.optimizer nipy.algorithms.registration.polyaffine nipy.algorithms.registration.resample nipy.algorithms.registration.scripting nipy.algorithms.registration.similarity_measures nipy.algorithms.registration.transform nipy.algorithms.registration.type_check nipy.algorithms.resample nipy.algorithms.segmentation.brain_segmentation nipy.algorithms.segmentation.segmentation nipy.algorithms.slicetiming.timefuncs nipy.algorithms.statistics.bayesian_mixed_effects nipy.algorithms.statistics.bench.bench_intvol nipy.algorithms.statistics.empirical_pvalue nipy.algorithms.statistics.formula.formulae nipy.algorithms.statistics.mixed_effects_stat nipy.algorithms.statistics.models.family.family nipy.algorithms.statistics.models.family.links nipy.algorithms.statistics.models.family.varfuncs nipy.algorithms.statistics.models.glm nipy.algorithms.statistics.models.model nipy.algorithms.statistics.models.nlsmodel nipy.algorithms.statistics.models.regression nipy.algorithms.statistics.models.utils nipy.algorithms.statistics.onesample nipy.algorithms.statistics.rft nipy.algorithms.statistics.utils nipy.algorithms.utils.fast_distance nipy.algorithms.utils.matrices nipy.algorithms.utils.pca nipy.cli.diagnose nipy.cli.img3dto4d nipy.cli.img4dto3d nipy.cli.realign4d nipy.cli.tsdiffana nipy.conftest nipy.core.image.image nipy.core.image.image_list nipy.core.image.image_spaces nipy.core.reference.array_coords nipy.core.reference.coordinate_map nipy.core.reference.coordinate_system nipy.core.reference.slices nipy.core.reference.spaces nipy.core.utils.generators nipy.interfaces.matlab nipy.interfaces.spm nipy.io.files nipy.io.nibcompat nipy.io.nifti_ref nipy.labs.datasets.converters nipy.labs.datasets.transforms.affine_transform nipy.labs.datasets.transforms.affine_utils nipy.labs.datasets.transforms.transform nipy.labs.datasets.volumes.volume_data nipy.labs.datasets.volumes.volume_field nipy.labs.datasets.volumes.volume_grid nipy.labs.datasets.volumes.volume_img nipy.labs.glm.glm nipy.labs.group.permutation_test nipy.labs.mask nipy.labs.spatial_models.bayesian_structural_analysis nipy.labs.spatial_models.bsa_io nipy.labs.spatial_models.discrete_domain nipy.labs.spatial_models.hierarchical_parcellation nipy.labs.spatial_models.hroi nipy.labs.spatial_models.mroi nipy.labs.spatial_models.parcel_io nipy.labs.spatial_models.parcellation nipy.labs.spatial_models.structural_bfls nipy.labs.statistical_mapping nipy.labs.utils.reproducibility_measures nipy.labs.utils.simul_multisubject_fmri_dataset nipy.labs.utils.zscore nipy.labs.viz_tools.activation_maps nipy.labs.viz_tools.anat_cache nipy.labs.viz_tools.cm nipy.labs.viz_tools.coord_tools nipy.labs.viz_tools.maps_3d nipy.labs.viz_tools.slicers nipy.labs.viz_tools.test.test_activation_maps nipy.labs.viz_tools.test.test_cm nipy.labs.viz_tools.test.test_coord_tools nipy.labs.viz_tools.test.test_edge_detect nipy.labs.viz_tools.test.test_slicers nipy.modalities.fmri.design nipy.modalities.fmri.design_matrix nipy.modalities.fmri.experimental_paradigm nipy.modalities.fmri.fmri nipy.modalities.fmri.fmristat.hrf nipy.modalities.fmri.fmristat.invert nipy.modalities.fmri.fmristat.model nipy.modalities.fmri.fmristat.outputters nipy.modalities.fmri.glm nipy.modalities.fmri.hemodynamic_models nipy.modalities.fmri.hrf nipy.modalities.fmri.realfuncs nipy.modalities.fmri.spm.correlation nipy.modalities.fmri.spm.model nipy.modalities.fmri.spm.reml nipy.modalities.fmri.spm.trace nipy.modalities.fmri.utils nipy.pkg_info nipy.testing.decorators nipy.utils nipy.utils.arrays nipy.utils.perlpie nipy.utils.utilities

moment_matching() (in module nipy.algorithms.segmentation.segmentation) monotone_fn_inverter() (in module nipy.algorithms.statistics.models.utils) mpl_imports() (in module nipy.conftest) MSE() (nipy.algorithms.statistics.models.regression.RegressionResults method) MSR() (nipy.algorithms.statistics.models.regression.RegressionResults method) mst() (in module nipy.algorithms.graph.graph) MST() (nipy.algorithms.statistics.models.regression.RegressionResults method) Mstep() (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) mu_ball() (in module nipy.algorithms.statistics.rft) mu_sphere() (in module nipy.algorithms.statistics.rft) MultilinearForm (class in nipy.algorithms.statistics.rft) multinomial() (in module nipy.algorithms.clustering.bgmm) multiple_fast_inv() (in module nipy.algorithms.statistics.utils) multiple_mahalanobis() (in module nipy.algorithms.statistics.utils) MultiSubjectParcellation (class in nipy.labs.spatial_models.parcellation) MutualInformation (class in nipy.algorithms.registration.similarity_measures)

N

n() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) n_prepad_if_needed (nipy.algorithms.interpolation.ImageInterpolator attribute) name (nipy.algorithms.statistics.formula.formulae.Beta attribute) (nipy.algorithms.statistics.formula.formulae.FactorTerm attribute) (nipy.algorithms.statistics.formula.formulae.Term attribute) (nipy.core.reference.coordinate_system.CoordinateSystem attribute) natural_spline() (in module nipy.algorithms.statistics.formula.formulae) (in module nipy.modalities.fmri.design) NDGridDomain (class in nipy.labs.spatial_models.discrete_domain) ndim (nipy.core.reference.coordinate_system.CoordinateSystem attribute) ndim() (nipy.core.image.image.Image method) ndims (nipy.core.reference.coordinate_map.AffineTransform attribute) (nipy.core.reference.coordinate_map.CoordinateMap attribute) needs_mpl_agg() (in module nipy.testing.decorators) needs_review() (in module nipy.testing.decorators) nifti2nipy() (in module nipy.io.nifti_ref) NiftiError (class in nipy.io.nifti_ref) nipy.algorithms.clustering.bgmm module nipy.algorithms.clustering.ggmixture module nipy.algorithms.clustering.gmm module nipy.algorithms.clustering.hierarchical_clustering module nipy.algorithms.clustering.imm module nipy.algorithms.clustering.utils module nipy.algorithms.clustering.von_mises_fisher_mixture module nipy.algorithms.diagnostics.commands module nipy.algorithms.diagnostics.screens module nipy.algorithms.diagnostics.timediff module nipy.algorithms.diagnostics.tsdiffplot module nipy.algorithms.fwhm module nipy.algorithms.graph.bipartite_graph module nipy.algorithms.graph.field module nipy.algorithms.graph.forest module nipy.algorithms.graph.graph module nipy.algorithms.group.parcel_analysis module nipy.algorithms.interpolation module nipy.algorithms.kernel_smooth module nipy.algorithms.optimize module nipy.algorithms.registration.affine module nipy.algorithms.registration.chain_transform module nipy.algorithms.registration.groupwise_registration module nipy.algorithms.registration.histogram_registration module nipy.algorithms.registration.optimizer module nipy.algorithms.registration.polyaffine module nipy.algorithms.registration.resample module nipy.algorithms.registration.scripting module nipy.algorithms.registration.similarity_measures module nipy.algorithms.registration.transform module nipy.algorithms.registration.type_check module nipy.algorithms.resample module nipy.algorithms.segmentation.brain_segmentation module nipy.algorithms.segmentation.segmentation module nipy.algorithms.slicetiming.timefuncs module nipy.algorithms.statistics.bayesian_mixed_effects module nipy.algorithms.statistics.bench.bench_intvol module nipy.algorithms.statistics.empirical_pvalue module nipy.algorithms.statistics.formula.formulae module nipy.algorithms.statistics.mixed_effects_stat module nipy.algorithms.statistics.models.family.family module nipy.algorithms.statistics.models.family.links module nipy.algorithms.statistics.models.family.varfuncs module nipy.algorithms.statistics.models.glm module nipy.algorithms.statistics.models.model module nipy.algorithms.statistics.models.nlsmodel module nipy.algorithms.statistics.models.regression module nipy.algorithms.statistics.models.utils module nipy.algorithms.statistics.onesample module nipy.algorithms.statistics.rft module nipy.algorithms.statistics.utils module nipy.algorithms.utils.fast_distance module nipy.algorithms.utils.matrices module nipy.algorithms.utils.pca module nipy.cli.diagnose module nipy.cli.img3dto4d module nipy.cli.img4dto3d module nipy.cli.realign4d module nipy.cli.tsdiffana module nipy.conftest module nipy.core.image.image module nipy.core.image.image_list module nipy.core.image.image_spaces module nipy.core.reference.array_coords module nipy.core.reference.coordinate_map module nipy.core.reference.coordinate_system module nipy.core.reference.slices module nipy.core.reference.spaces module nipy.core.utils.generators module

nipy.interfaces.matlab module nipy.interfaces.spm module nipy.io.files module nipy.io.nibcompat module nipy.io.nifti_ref module nipy.labs.datasets.converters module nipy.labs.datasets.transforms.affine_transform module nipy.labs.datasets.transforms.affine_utils module nipy.labs.datasets.transforms.transform module nipy.labs.datasets.volumes.volume_data module nipy.labs.datasets.volumes.volume_field module nipy.labs.datasets.volumes.volume_grid module nipy.labs.datasets.volumes.volume_img module nipy.labs.glm.glm module nipy.labs.group.permutation_test module nipy.labs.mask module nipy.labs.spatial_models.bayesian_structural_analysis module nipy.labs.spatial_models.bsa_io module nipy.labs.spatial_models.discrete_domain module nipy.labs.spatial_models.hierarchical_parcellation module nipy.labs.spatial_models.hroi module nipy.labs.spatial_models.mroi module nipy.labs.spatial_models.parcel_io module nipy.labs.spatial_models.parcellation module nipy.labs.spatial_models.structural_bfls module nipy.labs.statistical_mapping module nipy.labs.utils.reproducibility_measures module nipy.labs.utils.simul_multisubject_fmri_dataset module nipy.labs.utils.zscore module nipy.labs.viz_tools.activation_maps module nipy.labs.viz_tools.anat_cache module nipy.labs.viz_tools.cm module nipy.labs.viz_tools.coord_tools module nipy.labs.viz_tools.maps_3d module nipy.labs.viz_tools.slicers module nipy.labs.viz_tools.test.test_activation_maps module nipy.labs.viz_tools.test.test_cm module nipy.labs.viz_tools.test.test_coord_tools module nipy.labs.viz_tools.test.test_edge_detect module nipy.labs.viz_tools.test.test_slicers module nipy.modalities.fmri.design module nipy.modalities.fmri.design_matrix module nipy.modalities.fmri.experimental_paradigm module nipy.modalities.fmri.fmri module nipy.modalities.fmri.fmristat.hrf module nipy.modalities.fmri.fmristat.invert module nipy.modalities.fmri.fmristat.model module nipy.modalities.fmri.fmristat.outputters module nipy.modalities.fmri.glm module nipy.modalities.fmri.hemodynamic_models module nipy.modalities.fmri.hrf module nipy.modalities.fmri.realfuncs module nipy.modalities.fmri.spm.correlation module nipy.modalities.fmri.spm.model module nipy.modalities.fmri.spm.reml module nipy.modalities.fmri.spm.trace module nipy.modalities.fmri.utils module nipy.pkg_info module nipy.testing.decorators module nipy.utils module nipy.utils.arrays module nipy.utils.perlpie module nipy.utils.utilities module nipy2nifti() (in module nipy.io.nifti_ref) niter (nipy.algorithms.statistics.models.glm.Model attribute) NLSModel (class in nipy.algorithms.statistics.models.nlsmodel) norm_resid() (nipy.algorithms.statistics.models.regression.RegressionResults method) normal() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) normal_eval() (in module nipy.algorithms.clustering.bgmm) NormalEmpiricalNull (class in nipy.algorithms.statistics.empirical_pvalue), [1] normalization (nipy.algorithms.kernel_smooth.LinearFilter attribute) normalize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) normalized_external_field() (nipy.algorithms.segmentation.segmentation.Segmentation method) NormalizedMutualInformation (class in nipy.algorithms.registration.similarity_measures) npoints() (nipy.algorithms.registration.similarity_measures.CorrelationCoefficient method) (nipy.algorithms.registration.similarity_measures.CorrelationRatio method) (nipy.algorithms.registration.similarity_measures.CorrelationRatioL1 method) (nipy.algorithms.registration.similarity_measures.DiscreteParzenMutualInformation method) (nipy.algorithms.registration.similarity_measures.MutualInformation method) (nipy.algorithms.registration.similarity_measures.NormalizedMutualInformation method) (nipy.algorithms.registration.similarity_measures.ParzenMutualInformation method) (nipy.algorithms.registration.similarity_measures.SimilarityMeasure method) (nipy.algorithms.registration.similarity_measures.SupervisedLikelihoodRatio method) nseries() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) nsimplify() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method)

O

o (nipy.algorithms.statistics.rft.ECquasi property) OLS (class in nipy.modalities.fmri.fmristat.model) ols() (in module nipy.labs.glm.glm) OLSModel (class in nipy.algorithms.statistics.models.regression) one_sample_ftest() (in module nipy.algorithms.statistics.mixed_effects_stat) one_sample_ttest() (in module nipy.algorithms.statistics.mixed_effects_stat) onesample_stat() (in module nipy.labs.group.permutation_test) onesample_test() (in module nipy.labs.statistical_mapping) OneSidedF (class in nipy.algorithms.statistics.rft) openfmri2nipy() (in module nipy.modalities.fmri.design) opening() (nipy.algorithms.graph.field.Field method) optimize() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) order (nipy.algorithms.interpolation.ImageInterpolator property) (nipy.algorithms.statistics.rft.ECquasi property)

orth() (in module nipy.modalities.fmri.spm.reml) orth_axes() (in module nipy.core.reference.coordinate_map) OrthoSlicer (class in nipy.labs.viz_tools.slicers) output_AR1() (in module nipy.modalities.fmri.fmristat.model) (in module nipy.modalities.fmri.fmristat.outputters) output_F() (in module nipy.modalities.fmri.fmristat.model) (in module nipy.modalities.fmri.fmristat.outputters) output_resid() (in module nipy.modalities.fmri.fmristat.model) (in module nipy.modalities.fmri.fmristat.outputters) output_space (nipy.labs.datasets.transforms.affine_transform.AffineTransform attribute) (nipy.labs.datasets.transforms.transform.Transform attribute) output_T() (in module nipy.modalities.fmri.fmristat.model) (in module nipy.modalities.fmri.fmristat.outputters)

P

p_value() (nipy.modalities.fmri.glm.Contrast method) Paradigm (class in nipy.modalities.fmri.experimental_paradigm) param (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) (nipy.algorithms.registration.chain_transform.ChainTransform property) (nipy.algorithms.registration.polyaffine.PolyAffine property) (nipy.algorithms.registration.transform.Transform property) param_inds (nipy.algorithms.registration.affine.Affine attribute) (nipy.algorithms.registration.affine.Affine2D attribute) (nipy.algorithms.registration.affine.Rigid attribute) (nipy.algorithms.registration.affine.Rigid2D attribute) (nipy.algorithms.registration.affine.Similarity attribute) (nipy.algorithms.registration.affine.Similarity2D attribute) parameters() (nipy.algorithms.clustering.ggmixture.Gamma method) (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) params (nipy.algorithms.statistics.formula.formulae.Factor property) (nipy.algorithms.statistics.formula.formulae.Formula property) (nipy.algorithms.statistics.formula.formulae.RandomEffects property) parcel_analysis() (in module nipy.algorithms.group.parcel_analysis) parcel_input() (in module nipy.labs.spatial_models.parcel_io) parcel_maps() (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method) ParcelAnalysis (class in nipy.algorithms.group.parcel_analysis) parcellation_based_analysis() (in module nipy.labs.spatial_models.parcel_io) parcels() (in module nipy.core.utils.generators) parse_fname_axes() (in module nipy.algorithms.diagnostics.commands) partition() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) ParzenMutualInformation (class in nipy.algorithms.registration.similarity_measures) PCA pca() (in module nipy.algorithms.utils.pca) pca_image() (in module nipy.algorithms.utils.pca) peak_reproducibility() (in module nipy.labs.utils.reproducibility_measures) peak_XYZ() (in module nipy.labs.group.permutation_test) perl_dash_pie() (in module nipy.utils.perlpie) perm_prfx() (in module nipy.labs.spatial_models.hierarchical_parcellation) permutation_test (class in nipy.labs.group.permutation_test) permutation_test_onesample (class in nipy.labs.group.permutation_test) permutation_test_onesample_graph (class in nipy.labs.group.permutation_test) permutation_test_twosample (class in nipy.labs.group.permutation_test) PET pkg_commit_hash() (in module nipy.pkg_info) plot() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] plot2D() (in module nipy.algorithms.clustering.gmm) plot_anat() (in module nipy.labs.viz_tools.activation_maps) plot_anat_3d() (in module nipy.labs.viz_tools.maps_3d), [1] plot_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) plot_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) plot_map() (in module nipy.labs.viz_tools.activation_maps), [1] (nipy.labs.viz_tools.slicers.BaseSlicer method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) plot_map_3d() (in module nipy.labs.viz_tools.maps_3d), [1] plot_tsdiffs() (in module nipy.algorithms.diagnostics.tsdiffplot) plot_tsdiffs_image() (in module nipy.algorithms.diagnostics.tsdiffplot) plugin() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) Poisson (class in nipy.algorithms.statistics.models.family.family) PolyAffine (class in nipy.algorithms.registration.polyaffine) pop() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method)

population() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) pos_recipr() (in module nipy.algorithms.utils.matrices) posterior() (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) Power (class in nipy.algorithms.statistics.models.family.links) (class in nipy.algorithms.statistics.models.family.varfuncs) powsimp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) pre_rotation (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) precond (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) preconditioner() (in module nipy.algorithms.registration.affine) predict() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method) (nipy.algorithms.statistics.models.family.family.Binomial method) (nipy.algorithms.statistics.models.family.family.Family method) (nipy.algorithms.statistics.models.family.family.Gamma method) (nipy.algorithms.statistics.models.family.family.Gaussian method) (nipy.algorithms.statistics.models.family.family.InverseGaussian method) (nipy.algorithms.statistics.models.family.family.Poisson method) (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.model.Model method) (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) predicted() (nipy.algorithms.statistics.models.regression.RegressionResults method) prepare_arrays() (in module nipy.labs.statistical_mapping) primitive() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) print_extended_help() (in module nipy.utils.perlpie) probability_under_prior() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) product() (in module nipy.core.reference.coordinate_map) (in module nipy.core.reference.coordinate_system) propagate_upward() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) propagate_upward_and() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) pvalue() (nipy.algorithms.statistics.rft.ChiBarSquared method) (nipy.algorithms.statistics.rft.ChiSquared method) (nipy.algorithms.statistics.rft.ECcone method) (nipy.algorithms.statistics.rft.FStat method) (nipy.algorithms.statistics.rft.Hotelling method) (nipy.algorithms.statistics.rft.MultilinearForm method) (nipy.algorithms.statistics.rft.OneSidedF method) (nipy.algorithms.statistics.rft.Roy method) (nipy.algorithms.statistics.rft.TStat method) (nipy.labs.glm.glm.contrast method) (nipy.labs.group.permutation_test.permutation_test method) (nipy.labs.group.permutation_test.permutation_test_onesample method) (nipy.labs.group.permutation_test.permutation_test_onesample_graph method) (nipy.labs.group.permutation_test.permutation_test_twosample method)

Q

Q() (in module nipy.algorithms.statistics.rft) quasi() (nipy.algorithms.statistics.rft.ChiBarSquared method) (nipy.algorithms.statistics.rft.ChiSquared method) (nipy.algorithms.statistics.rft.ECcone method) (nipy.algorithms.statistics.rft.FStat method) (nipy.algorithms.statistics.rft.Hotelling method) (nipy.algorithms.statistics.rft.MultilinearForm method) (nipy.algorithms.statistics.rft.OneSidedF method) (nipy.algorithms.statistics.rft.Roy method) (nipy.algorithms.statistics.rft.TStat method)

R

r (nipy.algorithms.statistics.rft.ECquasi property) R2() (nipy.algorithms.statistics.models.regression.RegressionResults method) R2_adj() (nipy.algorithms.statistics.models.regression.RegressionResults method) radsimp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) RandomEffects (class in nipy.algorithms.statistics.formula.formulae) rank() (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) ratsimp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) rcall() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) Realign4d (class in nipy.algorithms.registration.groupwise_registration) realign4d() (in module nipy.algorithms.registration.groupwise_registration) Realign4dAlgorithm (class in nipy.algorithms.registration.groupwise_registration) recipr0() (in module nipy.algorithms.utils.matrices) recompute_labels() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) reduce() (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) reduce_coo_matrix() (in module nipy.labs.spatial_models.discrete_domain) reduce_to_leaves() (nipy.labs.spatial_models.hroi.HierarchicalROI method) reference() (nipy.core.image.image.Image method) refine() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) register_to() (nipy.core.reference.spaces.XYZSpace method) RegressionOutput (class in nipy.modalities.fmri.fmristat.outputters) RegressionOutputList (class in nipy.modalities.fmri.fmristat.outputters) RegressionResults (class in nipy.algorithms.statistics.models.regression) reml() (in module nipy.modalities.fmri.spm.reml) remove_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) remove_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) remove_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) remove_trivial_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) removeO() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) renamed_axes() (nipy.core.image.image.Image method) renamed_domain() (in module nipy.core.reference.coordinate_map) (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.CoordinateMap method) renamed_range() (in module nipy.core.reference.coordinate_map) (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.CoordinateMap method) renamed_reference() (nipy.core.image.image.Image method) reorder_from_leaves_to_roots() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) reordered_axes() (nipy.core.image.image.Image method) reordered_domain() (in module nipy.core.reference.coordinate_map) (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.CoordinateMap method)

reordered_range() (in module nipy.core.reference.coordinate_map) (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.CoordinateMap method) reordered_reference() (nipy.core.image.image.Image method) replace() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) replace_inside() (in module nipy.labs.viz_tools.cm) representative_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) resample() (in module nipy.algorithms.registration.resample) (in module nipy.algorithms.resample) (nipy.algorithms.registration.groupwise_registration.FmriRealign4d method) (nipy.algorithms.registration.groupwise_registration.Realign4d method) (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) (nipy.algorithms.registration.groupwise_registration.SpaceRealign method) (nipy.algorithms.registration.groupwise_registration.SpaceTimeRealign method) resample4d() (in module nipy.algorithms.registration.groupwise_registration) resample_full_data() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) resample_img2img() (in module nipy.algorithms.resample) resampled_to_img() (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_field.VolumeField method), [1] (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) resel2fwhm() (nipy.algorithms.fwhm.ReselImage method) (nipy.algorithms.fwhm.Resels method) ReselImage (class in nipy.algorithms.fwhm) Resels (class in nipy.algorithms.fwhm) resid() (nipy.algorithms.statistics.models.regression.RegressionResults method) responsibilities() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) results_generator() (in module nipy.modalities.fmri.fmristat.model) rewrite() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) right_incidence() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) Rigid (class in nipy.algorithms.registration.affine) Rigid2D (class in nipy.algorithms.registration.affine) roi_prevalence() (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method) rollaxis() (in module nipy.core.image.image) rollimg() (in module nipy.core.image.image) roots (nipy.algorithms.statistics.rft.ECquasi property) rotation (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) rotation_mat2vec() (in module nipy.algorithms.registration.affine) rotation_vec2mat() (in module nipy.algorithms.registration.affine) round() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) Roy (class in nipy.algorithms.statistics.rft) run() (nipy.algorithms.segmentation.segmentation.Segmentation method) run_jobdef() (in module nipy.interfaces.spm) run_matlab() (in module nipy.interfaces.matlab) run_matlab_script() (in module nipy.interfaces.matlab)

S

safe_dtype() (in module nipy.core.reference.coordinate_system) sample() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) sample_and_average() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) sample_indicator() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) save() (in module nipy.io.files) (in module nipy.labs.datasets.converters) (nipy.labs.glm.glm.glm method) (nipy.modalities.fmri.fmristat.model.ModelOutputImage method) scale_space() (in module nipy.algorithms.statistics.rft) scaling (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) scanner_coords() (in module nipy.algorithms.registration.groupwise_registration) scanner_time() (nipy.algorithms.registration.groupwise_registration.Image4d method) scans_for_fname() (in module nipy.interfaces.spm) scans_for_fnames() (in module nipy.interfaces.spm) score() (nipy.algorithms.statistics.mixed_effects_stat.MixedEffectsModel method) (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.model.LikelihoodModel method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method) screen() (in module nipy.algorithms.diagnostics.screens) SecondStage (class in nipy.modalities.fmri.spm.model) Segmentation (class in nipy.algorithms.segmentation.segmentation) select_id() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) select_roi() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) select_vmm() (in module nipy.algorithms.clustering.von_mises_fisher_mixture) select_vmm_cv() (in module nipy.algorithms.clustering.von_mises_fisher_mixture) separate() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) seq_prod() (in module nipy.utils.utilities) series() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) series_from_mask() (in module nipy.labs.mask) set() (nipy.algorithms.clustering.gmm.GridDescriptor method) set_constant_densities() (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) set_edges() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) set_euclidian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) set_feature() (nipy.labs.spatial_models.discrete_domain.DiscreteDomain method) (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.discrete_domain.StructuredDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) set_field() (nipy.algorithms.graph.field.Field method) set_fmin() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) set_fov() (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) set_gaussian() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) set_height() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) set_individual_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) set_markov_prior() (nipy.algorithms.segmentation.segmentation.Segmentation method) set_priors() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) set_roi_feature() (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) set_template_labels() (nipy.labs.spatial_models.parcellation.MultiSubjectParcellation method) set_transform() (nipy.algorithms.registration.groupwise_registration.Realign4dAlgorithm method) set_weights() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) shape() (nipy.core.image.image.Image method) shape_generator() (in module nipy.core.utils.generators) shifted_domain_origin() (in module nipy.core.reference.coordinate_map) shifted_range_origin() (in module nipy.core.reference.coordinate_map) show() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.ggmixture.GGGM method) (nipy.algorithms.clustering.ggmixture.GGM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method) (nipy.labs.spatial_models.structural_bfls.LandmarkRegions method) (nipy.modalities.fmri.design_matrix.DesignMatrix method) show_components() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method)

show_contrast() (nipy.modalities.fmri.design_matrix.DesignMatrix method) sigma2fwhm() (in module nipy.algorithms.kernel_smooth) similar_to() (nipy.core.reference.coordinate_map.AffineTransform method) (nipy.core.reference.coordinate_map.CoordinateMap method) (nipy.core.reference.coordinate_system.CoordinateSystem method) Similarity (class in nipy.algorithms.registration.affine) similarity (nipy.algorithms.registration.histogram_registration.HistogramRegistration property) Similarity2D (class in nipy.algorithms.registration.affine) SimilarityMeasure (class in nipy.algorithms.registration.similarity_measures) simple_update() (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) simplify() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) simulated_pvalue() (in module nipy.labs.statistical_mapping) single_run_realign4d() (in module nipy.algorithms.registration.groupwise_registration) slice_generator() (in module nipy.core.utils.generators) slice_parcels() (in module nipy.core.utils.generators) SliceMaker (class in nipy.core.image.image) slices2aff() (in module nipy.algorithms.registration.affine) smallest_bounding_box() (in module nipy.algorithms.registration.histogram_registration) smatrix_from_3d_array() (in module nipy.labs.spatial_models.discrete_domain) smatrix_from_3d_idx() (in module nipy.labs.spatial_models.discrete_domain) smatrix_from_nd_array() (in module nipy.labs.spatial_models.discrete_domain) smatrix_from_nd_idx() (in module nipy.labs.spatial_models.discrete_domain) smooth() (nipy.algorithms.kernel_smooth.LinearFilter method) smooth_image() (in module nipy.algorithms.registration.histogram_registration) smoothed_histogram_from_samples() (in module nipy.algorithms.statistics.empirical_pvalue) sort_key() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) sorted_values() (in module nipy.labs.group.permutation_test) space_time_realign() (in module nipy.algorithms.registration.scripting) SpaceError (class in nipy.core.reference.spaces) SpaceRealign (class in nipy.algorithms.registration.groupwise_registration) SpaceTimeRealign (class in nipy.algorithms.registration.groupwise_registration) SpaceTypeError (class in nipy.core.reference.spaces) spectral_decomposition() (in module nipy.modalities.fmri.fmristat.hrf) sphere_density() (in module nipy.algorithms.clustering.von_mises_fisher_mixture) spherical_search() (in module nipy.algorithms.statistics.rft) split() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) split_group() (in module nipy.labs.utils.reproducibility_measures) SPM SPM approach SPM software spm_dispersion_derivative() (in module nipy.modalities.fmri.hemodynamic_models) spm_hrf() (in module nipy.modalities.fmri.hemodynamic_models) spm_hrf_compat() (in module nipy.modalities.fmri.hrf) spm_path (nipy.interfaces.spm.SpmInfo property) spm_time_derivative() (in module nipy.modalities.fmri.hemodynamic_models) spm_ver (nipy.interfaces.spm.SpmInfo property) SpmInfo (class in nipy.interfaces.spm) spmt() (in module nipy.modalities.fmri.hrf) SSE() (nipy.algorithms.statistics.models.nlsmodel.NLSModel method) (nipy.algorithms.statistics.models.regression.RegressionResults method) SSR() (nipy.algorithms.statistics.models.regression.RegressionResults method) SST() (nipy.algorithms.statistics.models.regression.RegressionResults method) st_01234() (in module nipy.algorithms.slicetiming.timefuncs) st_02413() (in module nipy.algorithms.slicetiming.timefuncs) st_03142() (in module nipy.algorithms.slicetiming.timefuncs) st_13024() (in module nipy.algorithms.slicetiming.timefuncs) st_41302() (in module nipy.algorithms.slicetiming.timefuncs) st_42031() (in module nipy.algorithms.slicetiming.timefuncs) st_43210() (in module nipy.algorithms.slicetiming.timefuncs) st_odd0_even1() (in module nipy.algorithms.slicetiming.timefuncs) stack2designs() (in module nipy.modalities.fmri.design) stack_contrasts() (in module nipy.modalities.fmri.design) stack_designs() (in module nipy.modalities.fmri.design) stat() (nipy.labs.glm.glm.contrast method) (nipy.modalities.fmri.glm.Contrast method) statistics_from_position() (in module nipy.labs.utils.reproducibility_measures) step_function() (in module nipy.modalities.fmri.utils) StepFunction (class in nipy.algorithms.statistics.models.utils) stratify() (nipy.algorithms.statistics.formula.formulae.Factor method) strides_from() (in module nipy.utils.arrays) StructuredDomain (class in nipy.labs.spatial_models.discrete_domain) subdict() (in module nipy.algorithms.registration.optimizer) subdomain_from_array() (in module nipy.labs.spatial_models.mroi) subdomain_from_balls() (in module nipy.labs.spatial_models.mroi) subdomain_from_image() (in module nipy.labs.spatial_models.mroi) subdomain_from_position_and_image() (in module nipy.labs.spatial_models.mroi) SubDomains (class in nipy.labs.spatial_models.mroi) subfield() (nipy.algorithms.graph.field.Field method) subforest() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) subgraph() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) subgraph_left() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method) subgraph_right() (nipy.algorithms.graph.bipartite_graph.BipartiteGraph method) subgrid_affine() (in module nipy.algorithms.registration.affine) subs() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.Factor method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Formula method) (nipy.algorithms.statistics.formula.formulae.RandomEffects method) (nipy.algorithms.statistics.formula.formulae.Term method) subsample() (in module nipy.core.image.image) (nipy.algorithms.registration.histogram_registration.HistogramRegistration method) summary() (nipy.labs.glm.glm.contrast method) SupervisedLikelihoodRatio (class in nipy.algorithms.registration.similarity_measures) surrogate_2d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset), [1] surrogate_3d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset), [1] surrogate_4d_dataset() (in module nipy.labs.utils.simul_multisubject_fmri_dataset), [1] symmeterize() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) synchronized_order() (in module nipy.core.image.image)

T

t() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method) t_map() (nipy.algorithms.group.parcel_analysis.ParcelAnalysis method) t_stat() (in module nipy.algorithms.statistics.mixed_effects_stat) taylor_approx() (in module nipy.modalities.fmri.fmristat.hrf) taylor_term() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) Tcontrast() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method) TContrastResults (class in nipy.algorithms.statistics.models.model) Term (class in nipy.algorithms.statistics.formula.formulae) terms (nipy.algorithms.statistics.formula.formulae.Factor property) (nipy.algorithms.statistics.formula.formulae.Formula property) (nipy.algorithms.statistics.formula.formulae.RandomEffects property) terms() (in module nipy.algorithms.statistics.formula.formulae) test() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) test_anat_cache() (in module nipy.labs.viz_tools.test.test_activation_maps) test_coord_transform_trivial() (in module nipy.labs.viz_tools.test.test_coord_tools) test_demo_ortho_slicer() (in module nipy.labs.viz_tools.test.test_slicers) test_demo_plot_map() (in module nipy.labs.viz_tools.test.test_activation_maps) test_dim_cmap() (in module nipy.labs.viz_tools.test.test_cm) test_EC2() (in module nipy.algorithms.statistics.utils) test_EC3() (in module nipy.algorithms.statistics.utils) test_edge_detect() (in module nipy.labs.viz_tools.test.test_edge_detect) test_fast_abs_percentile() (in module nipy.labs.viz_tools.test.test_edge_detect) test_find_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools) test_find_maxsep_cut_coords() (in module nipy.labs.viz_tools.test.test_coord_tools) test_plot_anat() (in module nipy.labs.viz_tools.test.test_activation_maps) test_plot_anat_kwargs() (in module nipy.labs.viz_tools.test.test_activation_maps) test_plot_map_empty() (in module nipy.labs.viz_tools.test.test_activation_maps) test_plot_map_with_auto_cut_coords() (in module nipy.labs.viz_tools.test.test_activation_maps) test_replace_inside() (in module nipy.labs.viz_tools.test.test_cm) three_classes_GMM_fit() (in module nipy.algorithms.statistics.empirical_pvalue) threshold() (in module nipy.algorithms.registration.affine) (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] threshold_bifurcations() (nipy.algorithms.graph.field.Field method) threshold_connect_components() (in module nipy.labs.mask) time_slice_diffs() (in module nipy.algorithms.diagnostics.timediff) time_slice_diffs_image() (in module nipy.algorithms.diagnostics.timediff) TimeConvolver (class in nipy.modalities.fmri.utils) title() (nipy.labs.viz_tools.slicers.BaseSlicer method) (nipy.labs.viz_tools.slicers.BaseStackedSlicer method) (nipy.labs.viz_tools.slicers.OrthoSlicer method) (nipy.labs.viz_tools.slicers.XSlicer method) (nipy.labs.viz_tools.slicers.YSlicer method) (nipy.labs.viz_tools.slicers.ZSlicer method) to_coo_matrix() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.Graph method) (nipy.algorithms.graph.graph.WeightedGraph method)

to_coordsys_maker() (nipy.core.reference.spaces.XYZSpace method) to_image() (nipy.labs.spatial_models.discrete_domain.NDGridDomain method) (nipy.labs.spatial_models.hroi.HierarchicalROI method) (nipy.labs.spatial_models.mroi.SubDomains method) to_matrix44() (in module nipy.algorithms.registration.affine) to_matrix_vector() (in module nipy.labs.datasets.transforms.affine_utils) to_nnf() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) together() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) tol (nipy.algorithms.statistics.models.family.family.Binomial attribute) (nipy.algorithms.statistics.models.family.family.Family attribute) (nipy.algorithms.statistics.models.family.family.Gamma attribute) (nipy.algorithms.statistics.models.family.family.Gaussian attribute) (nipy.algorithms.statistics.models.family.family.InverseGaussian attribute) (nipy.algorithms.statistics.models.family.family.Poisson attribute) (nipy.algorithms.statistics.models.family.links.CDFLink attribute) (nipy.algorithms.statistics.models.family.links.CLogLog attribute) (nipy.algorithms.statistics.models.family.links.Log attribute) (nipy.algorithms.statistics.models.family.links.Logit attribute) (nipy.algorithms.statistics.models.family.varfuncs.Binomial attribute) topology() (nipy.labs.spatial_models.discrete_domain.MeshDomain method) TOutput (class in nipy.modalities.fmri.fmristat.outputters) tr_from_header() (in module nipy.algorithms.registration.groupwise_registration) train() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) Transform (class in nipy.algorithms.registration.transform) (class in nipy.labs.datasets.transforms.transform) translation (nipy.algorithms.registration.affine.Affine property) (nipy.algorithms.registration.affine.Affine2D property) (nipy.algorithms.registration.affine.Rigid property) (nipy.algorithms.registration.affine.Rigid2D property) (nipy.algorithms.registration.affine.Similarity property) (nipy.algorithms.registration.affine.Similarity2D property) transpose() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) transposed_values (nipy.core.reference.array_coords.ArrayCoordMap property) tree_depth() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.forest.Forest method) trigsimp() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) trRV() (in module nipy.modalities.fmri.spm.trace) tsdiffana() (in module nipy.algorithms.diagnostics.commands) TStat (class in nipy.algorithms.statistics.rft) ttest() (in module nipy.labs.utils.reproducibility_measures) two_level_glm() (in module nipy.algorithms.statistics.bayesian_mixed_effects) two_sample_ftest() (in module nipy.algorithms.statistics.mixed_effects_stat) two_sample_ttest() (in module nipy.algorithms.statistics.mixed_effects_stat) twosample_stat() (in module nipy.labs.group.permutation_test) twosample_test() (in module nipy.labs.statistical_mapping)

U

uncorrected_threshold() (nipy.algorithms.statistics.empirical_pvalue.NormalEmpiricalNull method), [1] unweighted_likelihood() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) unweighted_likelihood_() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) update() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.gmm.GMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method)

update_means() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) update_precisions() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) update_weights() (nipy.algorithms.clustering.bgmm.BGMM method) (nipy.algorithms.clustering.bgmm.VBGMM method) (nipy.algorithms.clustering.imm.IMM method) (nipy.algorithms.clustering.imm.MixedIMM method) use_derivatives() (in module nipy.algorithms.registration.optimizer)

V

valid (nipy.algorithms.statistics.models.family.family.Binomial attribute) (nipy.algorithms.statistics.models.family.family.Family attribute) (nipy.algorithms.statistics.models.family.family.Gamma attribute) (nipy.algorithms.statistics.models.family.family.Gaussian attribute) (nipy.algorithms.statistics.models.family.family.InverseGaussian attribute) (nipy.algorithms.statistics.models.family.family.Poisson attribute) values (nipy.core.reference.array_coords.ArrayCoordMap property) values_in_world() (nipy.labs.datasets.volumes.volume_data.VolumeData method) (nipy.labs.datasets.volumes.volume_field.VolumeField method), [1] (nipy.labs.datasets.volumes.volume_grid.VolumeGrid method) (nipy.labs.datasets.volumes.volume_img.VolumeImg method) variable (nipy.algorithms.statistics.rft.ECquasi property) variance (nipy.algorithms.statistics.models.family.family.Binomial attribute) (nipy.algorithms.statistics.models.family.family.Gamma attribute) (nipy.algorithms.statistics.models.family.family.Gaussian attribute) (nipy.algorithms.statistics.models.family.family.InverseGaussian attribute) (nipy.algorithms.statistics.models.family.family.Poisson attribute) VarianceFunction (class in nipy.algorithms.statistics.models.family.varfuncs) VBGMM (class in nipy.algorithms.clustering.bgmm) vcov() (nipy.algorithms.statistics.models.model.LikelihoodModelResults method) (nipy.algorithms.statistics.models.regression.RegressionResults method)

ve_step() (nipy.algorithms.segmentation.segmentation.Segmentation method) VisibleDeprecationWarning (class in nipy.utils) vm_step() (nipy.algorithms.segmentation.segmentation.Segmentation method) volume2ball() (in module nipy.algorithms.statistics.rft) VolumeData (class in nipy.labs.datasets.volumes.volume_data) VolumeField (class in nipy.labs.datasets.volumes.volume_field) VolumeGrid (class in nipy.labs.datasets.volumes.volume_grid) VolumeImg (class in nipy.labs.datasets.volumes.volume_img) VonMisesMixture (class in nipy.algorithms.clustering.von_mises_fisher_mixture) voronoi() (in module nipy.algorithms.clustering.utils) voronoi_diagram() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) voronoi_labelling() (nipy.algorithms.clustering.hierarchical_clustering.WeightedForest method) (nipy.algorithms.graph.field.Field method) (nipy.algorithms.graph.forest.Forest method) (nipy.algorithms.graph.graph.WeightedGraph method) VoxBo voxel voxel_reproducibility() (in module nipy.labs.utils.reproducibility_measures) voxel_thresholded_ttest() (in module nipy.labs.utils.reproducibility_measures)

W

ward() (in module nipy.algorithms.clustering.hierarchical_clustering) (nipy.algorithms.graph.field.Field method) ward_field_segment() (in module nipy.algorithms.clustering.hierarchical_clustering) ward_quick() (in module nipy.algorithms.clustering.hierarchical_clustering) ward_quick_segment() (in module nipy.algorithms.clustering.hierarchical_clustering) ward_segment() (in module nipy.algorithms.clustering.hierarchical_clustering) water activation PET weighted_density() (nipy.algorithms.clustering.von_mises_fisher_mixture.VonMisesMixture method) WeightedForest (class in nipy.algorithms.clustering.hierarchical_clustering) WeightedGraph (class in nipy.algorithms.graph.graph) weights() (nipy.algorithms.statistics.models.family.family.Binomial method) (nipy.algorithms.statistics.models.family.family.Family method) (nipy.algorithms.statistics.models.family.family.Gamma method) (nipy.algorithms.statistics.models.family.family.Gaussian method) (nipy.algorithms.statistics.models.family.family.InverseGaussian method) (nipy.algorithms.statistics.models.family.family.Poisson method) wgraph_from_3d_grid() (in module nipy.algorithms.graph.graph) wgraph_from_adjacency() (in module nipy.algorithms.graph.graph) wgraph_from_coo_matrix() (in module nipy.algorithms.graph.graph) whiten() (nipy.algorithms.statistics.models.glm.Model method) (nipy.algorithms.statistics.models.regression.ARModel method) (nipy.algorithms.statistics.models.regression.GLSModel method) (nipy.algorithms.statistics.models.regression.OLSModel method) (nipy.algorithms.statistics.models.regression.WLSModel method)

wishart_eval() (in module nipy.algorithms.clustering.bgmm) with_traceback() (nipy.core.reference.coordinate_map.AxisError method) (nipy.core.reference.coordinate_map.CoordMapMakerError method) (nipy.core.reference.coordinate_system.CoordinateSystemError method) (nipy.core.reference.coordinate_system.CoordSysMakerError method) (nipy.core.reference.spaces.AffineError method) (nipy.core.reference.spaces.AxesError method) (nipy.core.reference.spaces.SpaceError method) (nipy.core.reference.spaces.SpaceTypeError method) (nipy.io.nifti_ref.NiftiError method) (nipy.labs.datasets.transforms.transform.CompositionError method) (nipy.utils.VisibleDeprecationWarning method) WLSModel (class in nipy.algorithms.statistics.models.regression) world_space (nipy.labs.datasets.volumes.volume_data.VolumeData attribute) (nipy.labs.datasets.volumes.volume_field.VolumeField attribute) (nipy.labs.datasets.volumes.volume_grid.VolumeGrid attribute) (nipy.labs.datasets.volumes.volume_img.VolumeImg attribute) write_csv() (nipy.modalities.fmri.design_matrix.DesignMatrix method) write_data() (in module nipy.core.utils.generators) write_parcellation_images() (in module nipy.labs.spatial_models.parcel_io) write_screen_res() (in module nipy.algorithms.diagnostics.screens) write_to_csv() (nipy.modalities.fmri.experimental_paradigm.BlockParadigm method) (nipy.modalities.fmri.experimental_paradigm.EventRelatedParadigm method) (nipy.modalities.fmri.experimental_paradigm.Paradigm method)

X

x (nipy.core.reference.spaces.XYZSpace property) x_suffix (nipy.core.reference.spaces.XYZSpace attribute) xreplace() (nipy.algorithms.statistics.formula.formulae.Beta method) (nipy.algorithms.statistics.formula.formulae.FactorTerm method) (nipy.algorithms.statistics.formula.formulae.Term method) xslice() (in module nipy.core.reference.slices)

XSlicer (class in nipy.labs.viz_tools.slicers) xyz_affine() (in module nipy.core.image.image_spaces) (in module nipy.core.reference.spaces) xyz_order() (in module nipy.core.reference.spaces) xyz_ordered() (nipy.labs.datasets.volumes.volume_img.VolumeImg method) XYZSpace (class in nipy.core.reference.spaces)

Y

y (nipy.core.reference.spaces.XYZSpace property) y_suffix (nipy.core.reference.spaces.XYZSpace attribute)

yslice() (in module nipy.core.reference.slices) YSlicer (class in nipy.labs.viz_tools.slicers) yule_walker() (in module nipy.algorithms.statistics.models.regression)

Z

z (nipy.core.reference.spaces.XYZSpace property) z_score() (in module nipy.algorithms.statistics.utils) (nipy.modalities.fmri.glm.Contrast method) z_suffix (nipy.core.reference.spaces.XYZSpace attribute) z_to_slice() (nipy.algorithms.registration.groupwise_registration.Image4d method) zscore() (in module nipy.labs.utils.zscore) (nipy.labs.glm.glm.contrast method) (nipy.labs.group.permutation_test.permutation_test method) (nipy.labs.group.permutation_test.permutation_test_onesample method) (nipy.labs.group.permutation_test.permutation_test_onesample_graph method) (nipy.labs.group.permutation_test.permutation_test_twosample method)

zslice() (in module nipy.core.reference.slices) ZSlicer (class in nipy.labs.viz_tools.slicers)